Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1950 116 3e-21 seq1821 98.7 8e-16 >seq1950 Length=170036 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || |||| || || || || | | Sbjct 63252 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCA 63311 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| ||||||||||||||||||||||| || Sbjct 63312 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCCGACCAG 63371 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| || | |||||| ||| ||| | |||||||||||| Sbjct 63372 CAGCGCTTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGATTACAAC 63431 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 63432 ATCCAGAAGGAGTCCAC 63448 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || |||| || | ||| || | || Sbjct 63048 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTGAAGAGC 63107 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || ||||| || ||||| || || |||||||| Sbjct 63108 AAGATCCAGGACAAGGAGGGAATTCCTCCGGATCAGCAGCGTCTCATTTTCGCCGGCAAG 63167 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | ||||| |||||| | || |||||||| ||||| || || ||||| Sbjct 63168 CAACTCGAGGACGGCCGCACTCTTTCTGATTACAATATTCAGAAGGAGTCCAC 63220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA----AAC 22274 ||||| || || || || || | ||||| || || |||| ||||||||| | || Sbjct 63480 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTGAAGTGGAAT 63539 Query 22275 CACC-GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || | || ||| | ||| || |||| || ||||||||||||||||| || ||||| | Sbjct 63540 CATCAGACACCATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCAG 63599 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || || || || || || || || || ||| | ||||| ||| || | ||| | Sbjct 63600 ACCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGGACACTGAGCGACT 63659 Query 22394 ACAACATTCAAAAAGA 22409 ||||||| || || || Sbjct 63660 ACAACATCCAGAAGGA 63675 >seq1821 Length=46945 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || |||| || | ||| || |||| Sbjct 19135 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACAATCGACAATGTCAAGAGC 19194 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || ||||| ||||| || ||||| || || || || || Sbjct 19195 AAGATCCAGGACAAGGAGGGAATCCCACCGGATCAGCAGCGTCTGATCTTCGCTGGAAAG 19254 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||||| |||||| |||||| | || || |||||||| ||||| Sbjct 19255 CAGTTGGAGGATGGCCGCACTTTGTCTGACTACAACATCCAAAA 19298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419714566867690