Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 116 3e-21
seq1821 98.7 8e-16
>seq1950
Length=170036
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | || || || || |||| || || || || | |
Sbjct 63252 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCA 63311
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || ||||| ||||||||||||||||||||||| ||
Sbjct 63312 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCCGACCAG 63371
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || || ||||| || | |||||| ||| ||| | ||||||||||||
Sbjct 63372 CAGCGCTTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGATTACAAC 63431
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 63432 ATCCAGAAGGAGTCCAC 63448
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || || || || |||| || | ||| || | ||
Sbjct 63048 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTGAAGAGC 63107
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || ||||| || ||||| || || ||||||||
Sbjct 63108 AAGATCCAGGACAAGGAGGGAATTCCTCCGGATCAGCAGCGTCTCATTTTCGCCGGCAAG 63167
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| | ||||| |||||| | || |||||||| ||||| || || |||||
Sbjct 63168 CAACTCGAGGACGGCCGCACTCTTTCTGATTACAATATTCAGAAGGAGTCCAC 63220
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/196 (70%), Gaps = 5/196 (3%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA----AAC 22274
||||| || || || || || | ||||| || || |||| ||||||||| | ||
Sbjct 63480 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTGAAGTGGAAT 63539
Query 22275 CACC-GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
|| | || ||| | ||| || |||| || ||||||||||||||||| || ||||| |
Sbjct 63540 CATCAGACACCATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCAG 63599
Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393
| || || || || || || || || || ||| | ||||| ||| || | ||| |
Sbjct 63600 ACCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGGACACTGAGCGACT 63659
Query 22394 ACAACATTCAAAAAGA 22409
||||||| || || ||
Sbjct 63660 ACAACATCCAGAAGGA 63675
>seq1821
Length=46945
Score = 98.7 bits (108), Expect = 8e-16
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| || || || |||| || | ||| || ||||
Sbjct 19135 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACAATCGACAATGTCAAGAGC 19194
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || ||||| ||||| || ||||| || || || || ||
Sbjct 19195 AAGATCCAGGACAAGGAGGGAATCCCACCGGATCAGCAGCGTCTGATCTTCGCTGGAAAG 19254
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
||||| |||||| |||||| | || || |||||||| |||||
Sbjct 19255 CAGTTGGAGGATGGCCGCACTTTGTCTGACTACAACATCCAAAA 19298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419714566867690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |