Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq635 120 6e-22
seq2106 107 4e-18
seq1850 89.7 1e-12
>seq635
Length=74236
Score = 120 bits (132), Expect = 6e-22
Identities = 473/729 (65%), Gaps = 35/729 (5%)
Strand=Plus/Plus
Query 293103 AAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC 293162
|| ||||| |||||| | |||||||| || ||||||||||||||||| | | | ||
Sbjct 34307 AATGTTCAAGCTCTGAGACTGATCGATGAATGCACCACGATCAGCAGCCATTTGGA-CAA 34365
Query 293163 TGTCTTCATAGA--GATCTCCCACGATGTCTTGTACACTGCCTTGACATCA----GGATG 293216
|| ||| || ||| |||||| |||||||||| |||||||| ||| |||||
Sbjct 34366 TGG-TTCGCTGACTGATTTCCCACACAGTCTTGTACAATGCCTTGAGGTCATCTGGGATG 34424
Query 293217 AATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTC 293276
|| ||| | | || ||||| || || | |||||| || |||||||||| ||||
Sbjct 34425 TTTGG-AATG--CGT-TGAATAGAGCCACCATCGGCAATGATGCGGTTCTTCATGTTCTC 34480
Query 293277 GGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTC 293336
|||||| ||||| | | ||| || || || | | ||||||||| |||||||
Sbjct 34481 GGACCAGAGACCACGGTCGACGAGGTCCTTGAGGAGCCATGGGTTGACAACCTGGAACTC 34540
Query 293337 ACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGA 293396
|||||| | || || ||||||||| |||| || ||| ||| |
Sbjct 34541 ACCAGCCAACACCCGGCGAGAGTAAATGTTGCTAGTGTATGGCTCGAAGCACTCGTTGAA 34600
Query 293397 CCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCAC 293456
|| || |||| ||| || || || ||||| | || || ||||| | |||
Sbjct 34601 GCCCATGATTTGAGAAGTGGAAGCAGTTGGCATTGGGGCCACGAGAAGGGAGTTGCGCAC 34660
Query 293457 ACCCTTCTTGACACGCGAT-------TCGAGACCCGCCCAGTCC---AGAGCAGTCTGAG 293506
|| | || || ||||| | |||| | ||||||||| ||| |||| |
Sbjct 34661 CCCGTGCT---CA-GCGATCCTGGCCTTGAGAGCAGCCCAGTCCCAGAGATCAGT---TG 34713
Query 293507 GTGTAACACCCCAGAGATGATACTGCATGATACCCTTGCTGGCA--GGAGACCCCTCAAA 293564
| || |||||||| | || || || | |||||| || || || || || || |
Sbjct 34714 GAGTGACACCCCACATATCGTATTGAAGTTCACCCTT--TGACACTGGTGAGCCTTCGTA 34771
Query 293565 GGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGC-CTCAACAGCAGCAAAGT 293623
|| | |||||| | | |||| ||||| || || || |||| || ||| ||
Sbjct 34772 CGTCTCGTATGGGCCAAGTTTCTCAGCCAGCTCACAGGACGCAGTCAA-GGCGGCATGGT 34830
Query 293624 AAATGTGCTCGAAGATCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCT 293683
||||| ||| ||||||| |||||| | || |||| | |||||| || |||||
Sbjct 34831 AAATGGTCTCAAAGATCTGGACGTTGAGTCTACGTGCCTCCGGAGAGTCGAAGGGCATGC 34890
Query 293684 TCAGCTGGAAGAACACATCCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCT 293743
|| | ||| |||| |||||||| ||||| | ||| | |||||| ||||
Sbjct 34891 GAAGAGCAAGGAAGGCATCAGCGAGACCCTGGACACCAAGACCGATGGGGCGGTGACGGA 34950
Query 293744 TGTTGCTCGTCTCTGCCTCGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGT 293803
||||||| || ||||| || || | ||| | | || ||| || ||| || ||
Sbjct 34951 AGTTGCTCTTCCTCGCCTCTGGCACAGGATAGTGGTTGATCTCGATGGTCTTGTTCAAGT 35010
Query 293804 TCTTCGTGA 293812
|| | ||||
Sbjct 35011 TCCTGGTGA 35019
>seq2106
Length=142898
Score = 107 bits (118), Expect = 4e-18
Identities = 271/403 (67%), Gaps = 8/403 (2%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
||||| || || | |||||| | ||||| || ||||||||||||||| ||||| |||
Sbjct 24029 TCGAAAAAGTTGGTCTTGCCGCCAAGAGAAATGTTCTCCATGAAGTCGAATGGGTTGGTG 23970
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| ||| | | ||| ||||| | || | |||||||| |||||||| |
Sbjct 23969 GCGTTGTAGAACTTCTGGTTGCCGAGTGCCAACAACAGACGGTCTGCGACAAACTCGATG 23910
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741
||||| | ||| || | | |||||||| | | | ||| || | || || ||
Sbjct 23909 TACTGGCACATGAGCTTGGCATTCATGCCGAGGAGCATGAC-GGGGAGCGCATCTGTGAG 23851
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801
|||||| | || | || || ||||| | | || || ||| ||| | |
Sbjct 23850 GAATTCTTGCTCAATTGCGACAGCCTCGACGATGATGCTCTGCACGAGTGATGCGTCCGG 23791
Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGTCG 251859
|||||||| || | ||| |||| | || ||| || |||| ||||| ||||||||
Sbjct 23790 CTTGTTCTTGAGGTGGGAGAACAGCAGGCACGCGAAGTCTGT--GTGCATGCCCTCGTCA 23733
Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919
|| ||| || ||||| || | || || | ||| | ||||| ||| | | ||||
Sbjct 23732 CGCGAGATCAATTCGTTCGAGAACGTGAGACCGGCCATGAGACCACGCTTCTTCAACCAG 23673
Query 251920 AAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961
||||| | ||| || || |||||||| | | ||||||||||
Sbjct 23672 AAGATGGACGC-GAACGACCCAGAGAAGAAGATACCCTCGACA 23631
>seq1850
Length=539074
Score = 89.7 bits (98), Expect = 1e-12
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| |||||||| || ||||| ||| | || || |||| ||||||||||| |||
Sbjct 382281 GGCGAGGATCTTTGCAACTGTACATTCAACTTGGCCTACGGTGCTAAGATTCTGCTCAAC 382222
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
||||| | || | ||||||||||| | || || ||||| |||||||||| || |
Sbjct 382221 TCTACACATCTGCGCCTCAAGCGTGGCCAGCGATACGGTCTGCTCGGTCCCAACGGTTCC 382162
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| |||| || || ||||| ||||| |||| ||| | || || || || || |||
Sbjct 382161 GGAAAGACTACGCTCATGCGTGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 382103
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGA 279556
|| || | ||| || || || ||||||||
Sbjct 382102 GAGCGAAGTCAAGACCGTCTACGTCGAGCACGA 382070
Score = 86.0 bits (94), Expect = 1e-11
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || |||| ||||||||| || || ||||| || |||||||| || |||| |||||
Sbjct 381466 CTCCCGTATTGCTGTCATTGGTCCGAACGGTGCCGGAAAGTCTACGCTCGTCAACGTCCT 381407
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGG 280278
||||| ||| | | ||| | |||| ||| | |||| ||||| || || |
Sbjct 381406 TACTGGTGAG-CTGATCCCAACCAAGGGTGACGTCTACCAGCACGAGAACATCCGTATCG 381348
Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338
| || || ||||| |||||| ||||| || ||||||| ||| |||| ||
Sbjct 381347 CATATATCAAGCAGCATGCTTTCGCTCACATTGATCACCACCTCGACTTGACCCCATCTG 381288
Query 280339 AATACATTCAGTGGCG 280354
| ||||||||||||||
Sbjct 381287 AGTACATTCAGTGGCG 381272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027802217788466
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |