Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1821 111 4e-19
seq1950 100 7e-16
seq2050 86.0 1e-11
>seq1821
Length=46945
Score = 111 bits (122), Expect = 4e-19
Identities = 134/180 (74%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|||||||| || ||||| | | ||||| || || || || || ||||| |||||||||
Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404
|||||||| ||| ||||||||| || || |||||||| || ||| || || || ||
Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTC 19180
Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | ||| || || || || || ||||| ||||| || || || |||||||||||
Sbjct 19179 GATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 19120
>seq1950
Length=170036
Score = 100 bits (110), Expect = 7e-16
Identities = 162/233 (70%), Gaps = 5/233 (2%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | ||| || | || | ||||| || || ||||| || ||||||
Sbjct 63712 TCCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 63653
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| || || ||||| || | || || || |||||||| || ||||| || |||
Sbjct 63652 CAGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 63593
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
||| || || || || || || |||| || || || || || | || ||||| ||
Sbjct 63592 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCAC 63533
Query 288426 TTCG-----AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| || ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 63532 TTCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
>seq2050
Length=198407
Score = 86.0 bits (94), Expect = 1e-11
Identities = 240/366 (66%), Gaps = 2/366 (1%)
Strand=Plus/Plus
Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023
|| || |||||||| |||| | |||||| || ||||| | || || ||||| |
Sbjct 116189 ACAATGGGCGTGATAAACTCCAGCAAGAATCCGGGAATCTTGAGCAGCGACGGGAATTGG 116248
Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083
|| || ||||| |||| ||||| ||||| | || || |||| ||||||
Sbjct 116249 ACCTGCAAGAAGTTGATGAGAAGACCCTTGATGTGGGAACCATCGTGATCCTGATCGGTC 116308
Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 326143
|||||||| | ||| || || || || || || |||| |||| | |||
Sbjct 116309 ATGATCATGATATGTCCATATCGCAGACCTCTGGTATCGGTGTATTCTTTCTTGTGTTGG 116368
Query 326144 AGGCCGA-GAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGA 326202
|| |||| ||| || || | ||| || |||| ||||||| ||| | || ||
Sbjct 116369 AGACCGATGAACTTCTTGATGTTCTGA-ATCTCTTGATTCTTCGAGATCTGATCAACAGA 116427
Query 326203 TGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACC 326262
||||||||||||||| | | || ||||| |||||||| ||||| | ||| ||
Sbjct 116428 TGCATCGCGGACGTTGAGCACCTTACCACGCAGAGGGAAGACTCCGAACAAGTCGGGATT 116487
Query 326263 GACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAG 326322
|||||| | | || || | || || ||| || || || ||||| |||| | ||
Sbjct 116488 GACCACAGCACGACCAGCCAGGGCGAGAAGCGCGGCCGAGTCACCCTCAGTCAAGACTAG 116547
Query 326323 AGTGCA 326328
||||||
Sbjct 116548 AGTGCA 116553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179614709790428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |