Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1821 111 4e-19 seq1950 100 7e-16 seq2050 86.0 1e-11 >seq1821 Length=46945 Score = 111 bits (122), Expect = 4e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||| | | ||||| || || || || || ||||| ||||||||| Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404 |||||||| ||| ||||||||| || || |||||||| || ||| || || || || Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTC 19180 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || || || ||||| ||||| || || || ||||||||||| Sbjct 19179 GATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 19120 >seq1950 Length=170036 Score = 100 bits (110), Expect = 7e-16 Identities = 162/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || | || | ||||| || || ||||| || |||||| Sbjct 63712 TCCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 63653 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || ||||| || | || || || |||||||| || ||||| || ||| Sbjct 63652 CAGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 63593 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || || || |||| || || || || || | || ||||| || Sbjct 63592 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCAC 63533 Query 288426 TTCG-----AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 63532 TTCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480 >seq2050 Length=198407 Score = 86.0 bits (94), Expect = 1e-11 Identities = 240/366 (66%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 || || |||||||| |||| | |||||| || ||||| | || || ||||| | Sbjct 116189 ACAATGGGCGTGATAAACTCCAGCAAGAATCCGGGAATCTTGAGCAGCGACGGGAATTGG 116248 Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083 || || ||||| |||| ||||| ||||| | || || |||| |||||| Sbjct 116249 ACCTGCAAGAAGTTGATGAGAAGACCCTTGATGTGGGAACCATCGTGATCCTGATCGGTC 116308 Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 326143 |||||||| | ||| || || || || || || |||| |||| | ||| Sbjct 116309 ATGATCATGATATGTCCATATCGCAGACCTCTGGTATCGGTGTATTCTTTCTTGTGTTGG 116368 Query 326144 AGGCCGA-GAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACGGA 326202 || |||| ||| || || | ||| || |||| ||||||| ||| | || || Sbjct 116369 AGACCGATGAACTTCTTGATGTTCTGA-ATCTCTTGATTCTTCGAGATCTGATCAACAGA 116427 Query 326203 TGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACC 326262 ||||||||||||||| | | || ||||| |||||||| ||||| | ||| || Sbjct 116428 TGCATCGCGGACGTTGAGCACCTTACCACGCAGAGGGAAGACTCCGAACAAGTCGGGATT 116487 Query 326263 GACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAG 326322 |||||| | | || || | || || ||| || || || ||||| |||| | || Sbjct 116488 GACCACAGCACGACCAGCCAGGGCGAGAAGCGCGGCCGAGTCACCCTCAGTCAAGACTAG 116547 Query 326323 AGTGCA 326328 |||||| Sbjct 116548 AGTGCA 116553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179614709790428