Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 123 3e-23
>seq1950
Length=170036
Score = 123 bits (136), Expect = 3e-23
Identities = 162/222 (73%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| |||| ||||||||||| || || ||||| || ||| ||||| |
Sbjct 63700 ACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCC 63641
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || ||||||||||||||||| ||||| ||||||||||| | ||| | || ||||||
Sbjct 63640 GTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTT 63581
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTC-----CACATCGAC 42166
|| | ||| | || | |||| | | | ||||| ||||| ||| || |
Sbjct 63580 GT-CTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACTTCACTTCAAG 63522
Query 42167 CGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || ||||| || || ||||| || ||||| |||||
Sbjct 63521 TGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
Score = 109 bits (120), Expect = 6e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065
|||| ||| |||||| || || |||||||| | ||| || || | || || || |||
Sbjct 63454 TGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCCTCGAGTTGC 63395
Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125
|| |||||||| || | ||||||||||||| ||| | | |||||||||| ||| | ||
Sbjct 63394 TTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCC-TGAATCTT 63336
Query 42126 TG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
| |||| | | | ||||| || || || |||| |||||||| || || ||
Sbjct 63335 GGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGT 63276
Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| ||||||||||||||
Sbjct 63275 GAGGGTCTTGACAAAGATTTGCAT 63252
Score = 91.5 bits (100), Expect = 2e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| |||||||||||||||| ||||| || |||| || || ||||| || |||||
Sbjct 63215 CTCCTTCTGAATATTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 63156
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| |||||||| || | || | | |||||||||| ||| || || | |
Sbjct 63155 AATGAGACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATT 63096
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
| | |||||| || || || |||| |||||||| ||||| ||
Sbjct 63095 GTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 63048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543194969039840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |