Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2106 167 2e-36 seq1950 91.5 1e-13 >seq2106 Length=142898 Score = 167 bits (184), Expect = 2e-36 Identities = 532/808 (66%), Gaps = 19/808 (2%) Strand=Plus/Plus Query 52038 GAGGAGGTTGATATGTCGAGGGACTATGACGACTTTGAGTCTAAATTAAACGATGACGAG 52097 |||||| ||||| |||| | |||| | |||||| | | ||| |||||||||||| Sbjct 23251 GAGGAGATTGATCTGTCCAAGGACCTTCACGACTGGAACAAGAGATTGAACGATGACGAG 23310 Query 52098 CGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGAACATT 52157 || || || ||| ||||| | || ||||||||||| | ||| | || || ||| Sbjct 23311 CGATACTTCATCTCACACGTCCTTGCTTTCTTCGCCGCATCTGATGGAATTGTCAACGAG 23370 Query 52158 AACCTCATCGAG---TACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATACTTTTAT 52214 ||||| | ||| | || |||| | | || | | || || || | || ||| || Sbjct 23371 AACCTGGTTGAGCGTTTCA-GCAGTGAA--GTACAGATACCTGAAGCACGATGCTTCTAC 23427 Query 52215 AATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAGCAG 52274 || || | | || ||| | | ||| |||| | ||| ||||| || || || Sbjct 23428 GGATTCCAGATCATGATGGAGAACATCCACTCGGAAACATACTCCCTGCTTATCGA-CAC 23486 Query 52275 CTGATAAAAGATGAGCACGAGC-GCGA-CACG-CTGCTGAATGCGTTCGAGCACGTGCCG 52331 || | | || || | | ||| |||| || || | || || |||| || | || Sbjct 23487 CT-ACATCAGC-GAACCCAAGCAGCGATCATATCTCTTCAACGCCATCGATAACATCCCA 23544 Query 52332 TGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTG 52391 || | || || |||||| | |||||| || |||||| | | | | || | Sbjct 23545 TGTATCCGTAAGAAGGCTGACTGGGCATTGCGATGGATCTCTGACAAGAATTCGACCTTT 23604 Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 ||| || || | || ||||| |||||||| | || || || || || || Sbjct 23605 GCCTGCCGACTGATCGCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGGTCGTTCGCG 23664 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 ||||||| | | || | | || | ||| |||| || |||||| ||||| ||| Sbjct 23665 TCCATCTTCTGGTTGAAGAAGCGTGGTCTCATGGCCGGTCTCACGTTCTCGAACGAATTG 23724 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || ||||| ||||| || ||||||| ||||| |||||||| | | | | | | Sbjct 23725 ATCTCGCGTGACGAGGGCATGCACACAGACTTCGCGTGCCTGCTGTTCT---CCCACCTC 23781 Query 52572 ACCGAAAAATTGGATTCGG-ACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 | | || ||| | || || | | |||||| || ||||| || || || || Sbjct 23782 AAGAACAAGCCGGACGCATCACTCG-TGCAGAGCATCATCGTCGAGGCTGTCGCAATTGA 23840 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690 | || || | || | ||||| || ||| ||| || |||||||| || || ||| Sbjct 23841 GCAAGAATTCCTCACAGATGCGCTCCCCGTCATGCTCCTCGGCATGAATGCCAAGCTCAT 23900 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGT 52749 |||| |||||||||||||||| || || ||||||||| || ||| |||| ||| |||| Sbjct 23901 GTGCCAGTACATCGAGTTTGTCGCAGACCGTCTGTTGTTGGCACTC-GGCAACCAGAAGT 23959 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 || |||||| ||| || || || || ||| | |||||||| |||| |||||||||| Sbjct 23960 TCTACAACGCCACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCA 24019 Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||| || || || || Sbjct 24020 ACTTTTTCGAGAAGCGTGTTGGTGACTA 24047 >seq1950 Length=170036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||| || ||||| ||||||||||| || || | Sbjct 63445 GACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCG 63386 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| | ||||| ||||| || || ||||| || ||||| ||| | || | || Sbjct 63385 AAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTC-CTGAATCTTGGACTTGAC 63327 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| | ||||| ||||||| || | || || ||||| || || | Sbjct 63326 ATTG-TCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCT 63268 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| || ||||| Sbjct 63267 TGACAAAGATTTGCAT 63252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246110186720