Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2106 167 2e-36
seq1950 91.5 1e-13
>seq2106
Length=142898
Score = 167 bits (184), Expect = 2e-36
Identities = 532/808 (66%), Gaps = 19/808 (2%)
Strand=Plus/Plus
Query 52038 GAGGAGGTTGATATGTCGAGGGACTATGACGACTTTGAGTCTAAATTAAACGATGACGAG 52097
|||||| ||||| |||| | |||| | |||||| | | ||| ||||||||||||
Sbjct 23251 GAGGAGATTGATCTGTCCAAGGACCTTCACGACTGGAACAAGAGATTGAACGATGACGAG 23310
Query 52098 CGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGAACATT 52157
|| || || ||| ||||| | || ||||||||||| | ||| | || || |||
Sbjct 23311 CGATACTTCATCTCACACGTCCTTGCTTTCTTCGCCGCATCTGATGGAATTGTCAACGAG 23370
Query 52158 AACCTCATCGAG---TACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATACTTTTAT 52214
||||| | ||| | || |||| | | || | | || || || | || ||| ||
Sbjct 23371 AACCTGGTTGAGCGTTTCA-GCAGTGAA--GTACAGATACCTGAAGCACGATGCTTCTAC 23427
Query 52215 AATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAGCAG 52274
|| || | | || ||| | | ||| |||| | ||| ||||| || || ||
Sbjct 23428 GGATTCCAGATCATGATGGAGAACATCCACTCGGAAACATACTCCCTGCTTATCGA-CAC 23486
Query 52275 CTGATAAAAGATGAGCACGAGC-GCGA-CACG-CTGCTGAATGCGTTCGAGCACGTGCCG 52331
|| | | || || | | ||| |||| || || | || || |||| || | ||
Sbjct 23487 CT-ACATCAGC-GAACCCAAGCAGCGATCATATCTCTTCAACGCCATCGATAACATCCCA 23544
Query 52332 TGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTG 52391
|| | || || |||||| | |||||| || |||||| | | | | || |
Sbjct 23545 TGTATCCGTAAGAAGGCTGACTGGGCATTGCGATGGATCTCTGACAAGAATTCGACCTTT 23604
Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451
||| || || | || ||||| |||||||| | || || || || || ||
Sbjct 23605 GCCTGCCGACTGATCGCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGGTCGTTCGCG 23664
Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511
||||||| | | || | | || | ||| |||| || |||||| ||||| |||
Sbjct 23665 TCCATCTTCTGGTTGAAGAAGCGTGGTCTCATGGCCGGTCTCACGTTCTCGAACGAATTG 23724
Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571
|| ||||| ||||| || ||||||| ||||| |||||||| | | | | | |
Sbjct 23725 ATCTCGCGTGACGAGGGCATGCACACAGACTTCGCGTGCCTGCTGTTCT---CCCACCTC 23781
Query 52572 ACCGAAAAATTGGATTCGG-ACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630
| | || ||| | || || | | |||||| || ||||| || || || ||
Sbjct 23782 AAGAACAAGCCGGACGCATCACTCG-TGCAGAGCATCATCGTCGAGGCTGTCGCAATTGA 23840
Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690
| || || | || | ||||| || ||| ||| || |||||||| || || |||
Sbjct 23841 GCAAGAATTCCTCACAGATGCGCTCCCCGTCATGCTCCTCGGCATGAATGCCAAGCTCAT 23900
Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGT 52749
|||| |||||||||||||||| || || ||||||||| || ||| |||| ||| ||||
Sbjct 23901 GTGCCAGTACATCGAGTTTGTCGCAGACCGTCTGTTGTTGGCACTC-GGCAACCAGAAGT 23959
Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809
|| |||||| ||| || || || || ||| | |||||||| |||| ||||||||||
Sbjct 23960 TCTACAACGCCACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCA 24019
Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||||||||||| || || || ||
Sbjct 24020 ACTTTTTCGAGAAGCGTGTTGGTGACTA 24047
>seq1950
Length=170036
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||| ||| || ||||| ||||||||||| || || |
Sbjct 63445 GACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCG 63386
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538
|||| | ||||| ||||| || || ||||| || ||||| ||| | || | ||
Sbjct 63385 AAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTC-CTGAATCTTGGACTTGAC 63327
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | |||||| | ||||| ||||||| || | || || ||||| || || |
Sbjct 63326 ATTG-TCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCT 63268
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| || |||||
Sbjct 63267 TGACAAAGATTTGCAT 63252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496246110186720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |