Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2106 123 2e-23
seq1950 104 2e-17
seq1821 89.7 5e-13
>seq2106
Length=142898
Score = 123 bits (136), Expect = 2e-23
Identities = 300/445 (67%), Gaps = 21/445 (5%)
Strand=Plus/Plus
Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202
||||||||||||| |||||||| |||||||||| || || ||| | || || |
Sbjct 23615 TGATCGCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGGTCGTTCGCGTCCATCTTCT 23674
Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262
|||| | || | ||| |||| |||||||| ||||| | |||||| | |
Sbjct 23675 GGTTGAAGAAGCGTGGTCTCATGGCCGGTCTCACGTTCTCGAACGAATTGATCTCGCGTG 23734
Query 47263 ACGAAGGCCTGCACACCAACTT----TGCCTGTCTCTACTACAACACTAGAGTCGATCAA 47318
|||| ||| ||||||| |||| |||||| || | || | || || | |
Sbjct 23735 ACGAGGGCATGCACACAGACTTCGCGTGCCTG-CTGTTCTCCCACC------TCAAGAAC 23787
Query 47319 AAGTTGGACGTGCCCACCGT-CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGA 47377
||| ||||| | ||| ||| | ||| | | ||| || ||||| |||||| ||
Sbjct 23788 AAGCCGGACGCATCACTCGTGCAGAG-CATCATCGTCGAGGCTGTCGCAATTGAGCAAGA 23846
Query 47378 GTTTTTCGCCGAGGCTCTGCCCGAATCTT--TAGTGGGAATGAACGCGGAGATGATGAGA 47435
|| || | || || || |||| || | | | || ||||| || || | ||| |
Sbjct 23847 ATTCCTCACAGATGCGCTCCCCG--TCATGCTCCTCGGCATGAATGCCAAGCTCATGTGC 23904
Query 47436 AAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT--CAGCTAAAGTATCCCAAGATTT 47493
|||||||||| |||||||| ||||| ||| | ||| || || | | ||| | |
Sbjct 23905 CAGTACATCGAGTTTGTCGCAGACCGTCTGTT-GTTGGCA-CTCGGCAACCAGAAGTTCT 23962
Query 47494 ACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACT 47553
|| || || || |||||||| || ||| | |||||||| || | |||||||||||||
Sbjct 23963 ACAACGCCACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACT 24022
Query 47554 TTTTCGAGAAGCGCGTCGGCGAATA 47578
||||||||||||| || || || ||
Sbjct 24023 TTTTCGAGAAGCGTGTTGGTGACTA 24047
>seq1950
Length=170036
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||||||| || || || ||| || || || || |||
Sbjct 63448 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCCTCGAGTTGCTTGCCA 63389
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| ||||| || || |||||||||||| || || ||||
Sbjct 63388 GCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 63329
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||| | | ||| || |||| ||| | || || || || || ||
Sbjct 63328 ACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTC 63269
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||| || |||||
Sbjct 63268 TTGACAAAGATTTGCAT 63252
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/233 (69%), Gaps = 5/233 (2%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | |||||| || | || ||| || || || ||||| ||||
Sbjct 63712 TCCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 63653
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| || || || || ||||| || |||||| |||| | |||||||| || || ||
Sbjct 63652 CAGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 63593
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-----TACTC 127060
|||||||||||||| || ||| ||||| | |||| |||||| | | | |
Sbjct 63592 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCAC 63533
Query 127061 TCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| ||||| | || | || |||||||| || || || || || ||||||||
Sbjct 63532 TTCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
Score = 82.4 bits (90), Expect = 7e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || |||||||||||||| | ||||| || || || || || ||
Sbjct 63220 GTGGACTCCTTCTGAATATTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 63161
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | || | ||||||||||| ||||| || |||||||||||| ||| || |||
Sbjct 63160 GCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGCTCTTC 63101
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| | |||| ||||| | ||| || |||| ||| | || ||||||||||
Sbjct 63100 ACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCA 63046
>seq1821
Length=46945
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
||||| || ||||| || || ||||| ||| || | ||| ||||||||| |||||
Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| ||||||||||| || || || |||||||||||| ||| || ||||| | |||
Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 19179
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| ||||| | |||||| || | ||| | || ||||| || || || || || ||
Sbjct 19178 ATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 19120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475485191686240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |