Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2106 123 2e-23 seq1950 104 2e-17 seq1821 89.7 5e-13 >seq2106 Length=142898 Score = 123 bits (136), Expect = 2e-23 Identities = 300/445 (67%), Gaps = 21/445 (5%) Strand=Plus/Plus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202 ||||||||||||| |||||||| |||||||||| || || ||| | || || | Sbjct 23615 TGATCGCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGGTCGTTCGCGTCCATCTTCT 23674 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 |||| | || | ||| |||| |||||||| ||||| | |||||| | | Sbjct 23675 GGTTGAAGAAGCGTGGTCTCATGGCCGGTCTCACGTTCTCGAACGAATTGATCTCGCGTG 23734 Query 47263 ACGAAGGCCTGCACACCAACTT----TGCCTGTCTCTACTACAACACTAGAGTCGATCAA 47318 |||| ||| ||||||| |||| |||||| || | || | || || | | Sbjct 23735 ACGAGGGCATGCACACAGACTTCGCGTGCCTG-CTGTTCTCCCACC------TCAAGAAC 23787 Query 47319 AAGTTGGACGTGCCCACCGT-CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGA 47377 ||| ||||| | ||| ||| | ||| | | ||| || ||||| |||||| || Sbjct 23788 AAGCCGGACGCATCACTCGTGCAGAG-CATCATCGTCGAGGCTGTCGCAATTGAGCAAGA 23846 Query 47378 GTTTTTCGCCGAGGCTCTGCCCGAATCTT--TAGTGGGAATGAACGCGGAGATGATGAGA 47435 || || | || || || |||| || | | | || ||||| || || | ||| | Sbjct 23847 ATTCCTCACAGATGCGCTCCCCG--TCATGCTCCTCGGCATGAATGCCAAGCTCATGTGC 23904 Query 47436 AAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT--CAGCTAAAGTATCCCAAGATTT 47493 |||||||||| |||||||| ||||| ||| | ||| || || | | ||| | | Sbjct 23905 CAGTACATCGAGTTTGTCGCAGACCGTCTGTT-GTTGGCA-CTCGGCAACCAGAAGTTCT 23962 Query 47494 ACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACT 47553 || || || || |||||||| || ||| | |||||||| || | ||||||||||||| Sbjct 23963 ACAACGCCACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACT 24022 Query 47554 TTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||||| || || || || Sbjct 24023 TTTTCGAGAAGCGTGTTGGTGACTA 24047 >seq1950 Length=170036 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| || || || ||| || || || || ||| Sbjct 63448 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCCTCGAGTTGCTTGCCA 63389 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| ||||| || || |||||||||||| || || |||| Sbjct 63388 GCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 63329 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | | ||| || |||| ||| | || || || || || || Sbjct 63328 ACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTC 63269 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 63268 TTGACAAAGATTTGCAT 63252 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||| || | || ||| || || || ||||| |||| Sbjct 63712 TCCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 63653 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || ||||| || |||||| |||| | |||||||| || || || Sbjct 63652 CAGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGG 63593 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-----TACTC 127060 |||||||||||||| || ||| ||||| | |||| |||||| | | | | Sbjct 63592 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCAC 63533 Query 127061 TCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| | || | || |||||||| || || || || || |||||||| Sbjct 63532 TTCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || |||||||||||||| | ||||| || || || || || || Sbjct 63220 GTGGACTCCTTCTGAATATTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 63161 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||||||||| ||||| || |||||||||||| ||| || ||| Sbjct 63160 GCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGCTCTTC 63101 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | | |||| ||||| | ||| || |||| ||| | || |||||||||| Sbjct 63100 ACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCA 63046 >seq1821 Length=46945 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || ||||| || || ||||| ||| || | ||| ||||||||| ||||| Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||||| || || || |||||||||||| ||| || ||||| | ||| Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 19179 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | ||||| | |||||| || | ||| | || ||||| || || || || || || Sbjct 19178 ATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 19120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485191686240