Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 122 1e-22
seq2084 102 9e-17
seq491 96.9 4e-15
seq2167 84.2 2e-11
>seq1950
Length=170036
Score = 122 bits (134), Expect = 1e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || || || | || ||||| |||||||| |||||
Sbjct 63443 CTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAA 63384
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||||| || | | |||||||||| ||||| ||||| |
Sbjct 63383 GATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACATT 63324
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || || | |||||||| || || || || || || ||
Sbjct 63323 GTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 63264
Query 46582 AAAGATTTGCAT 46593
||||||||||||
Sbjct 63263 AAAGATTTGCAT 63252
Score = 111 bits (122), Expect = 2e-19
Identities = 157/221 (71%), Gaps = 5/221 (2%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| |||| || |||||||| ||||| ||||||||| || || || |
Sbjct 63700 ACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCC 63641
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| ||||||||||| || ||||| || | |||||||||||| | || | || ||||||
Sbjct 63640 GTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTT 63581
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTC-----CACATCCACC 46552
||| |||||| ||||| | | | ||||| ||||| ||| || |
Sbjct 63580 GTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACTTCACTTCAAGT 63521
Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || ||||| || || || || || ||||| |||||
Sbjct 63520 GTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
Score = 104 bits (114), Expect = 3e-17
Identities = 125/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || |||||||| || || |||||||| |||| ||||| ||||||||||||||
Sbjct 63215 CTCCTTCTGAATATTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 63156
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | | |||||||||| |||||| |||| | |
Sbjct 63155 AATGAGACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATT 63096
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | |||||| || || || || | |||||||| ||||| ||||
Sbjct 63095 GTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCA 63046
>seq2084
Length=280932
Score = 102 bits (112), Expect = 9e-17
Identities = 82/99 (83%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || ||||| | || ||||||||||||||||||||
Sbjct 181281 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAA 181222
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
||||||||||||||||| | || | | |||||||||
Sbjct 181221 GATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 181183
>seq491
Length=81577
Score = 96.9 bits (106), Expect = 4e-15
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || | | | ||||||||||| || ||||| ||||| ||||| ||||||| ||||||
Sbjct 41578 CTCTTTCTAGGTGTTGTAGTCGGAGAGGGTGCGGTCGTCCTCGAGTTGCTTGCTGGCGAA 41519
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||||| ||| || | |||||||||||| |||
Sbjct 41518 GATCAAGCGCTGCTAGTCTAGTGGGATGCTCTCCTTGTCGATG 41476
>seq2167
Length=8863
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465
|| ||||| ||||||||||| || || || ||||| ||||| | |||||| ||||| ||
Sbjct 5425 TTCTGGATGTTGTAGTCGGAAAGGGTACGGTCGTCCTCGAGTTACTTGCCAGCGAAGATT 5484
Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||| ||||||||| | || | | ||||||||| |||
Sbjct 5485 AAGCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCAATG 5523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565219846049520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |