Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2106 264 1e-65
seq1950 96.9 3e-15
seq1821 95.1 1e-14
seq2084 86.0 6e-12
>seq2106
Length=142898
Score = 264 bits (292), Expect = 1e-65
Identities = 560/825 (68%), Gaps = 17/825 (2%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683
||||| ||||| || || || || ||||| |||||| | ||| || || || |||||
Sbjct 24032 TTCTCGAAAAAGTTGGTCTTGCCG-CCAAGAGAAATGTTCTCCATGAAGTCGAATGGGTT 23974
Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740
|| | ||||||| ||| | |||||| | | || | ||| | ||| || || ||
Sbjct 23973 GGTGGCGTTGTAGAACTTCTGGTTGCCGAGT--GCCAACAA-CAGACGGTCTGCGACAAA 23917
Query 132741 CTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTT 132799
||||||||| || ||||| | || ||| | | | || || || || || ||||| |
Sbjct 23916 CTCGATGTACTGGCACATGAGCTTGGCATTCATG-CCGAGGAGCATGACGGGGAGCGCAT 23858
Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859
| ||||| || |||||| || ||||| || ||| || ||| | ||| | | |
Sbjct 23857 CTGTGAGGAATTCTTGCTCAATTGCGACAGCCTCGACGATGATGCTCTGCACGAGTGATG 23798
Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919
|| |||| | | | || ||||| || ||| || ||||| |||| |||||
Sbjct 23797 CGTCCGGCTTGTTCTTGAGGTGGGAGAACAGCAGGCACGCGAAGTCTGTGTGCATGCCCT 23738
Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979
|||| | || || | |||||| ||| || | |||| |||||| || || || || |
Sbjct 23737 CGTCACGCGAGATCAATTCGTTCGAGAACGTGAGACCGGCCATGAGACCACGCTTCTTCA 23678
Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039
||| || |||| ||||| || || ||||||| |||||||| || |||||||| |
Sbjct 23677 ACCAGAAGATGGACGCGAACGACCCAGAGAAGAAGATACCCTCGACAGCAGCGAAAGCGA 23618
Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099
||| || | | || || | | ||| | |||||| |||| ||||| || ||||
Sbjct 23617 TCAGTCGGCAGGCAAAGGTCGAATTCTTGTCAGAGATCCATCGCAATGCCCAGTCAGCCT 23558
Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGG 133159
| | || || || || | ||||||||||| || | | | || || | ||
Sbjct 23557 TCTTACGGATACATGGGATGTTATCGATGGCGTTGAAGAGAT--ATGATCGCTGCTTGGG 23500
Query 133160 AACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGC 133217
||| | |||||||||||| || || || |||||||||| | |||||||||
Sbjct 23499 TTCGCTGATGTAGGTGTCGATAAGCAGGGAGTATGTTTCCGAGTGGATGTTCTCCATCAT 23440
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
||| || || ||||| ||||| || || || | ||| ||||| |||||||||
Sbjct 23439 GATCTGGAATCCGTAGAAGCATCGTGCTTCAGGTATCTGTACTTCACTGCTGAAACGCTC 23380
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
||||| || |||||||| || || || |||||||| || || || ||||| |||
Sbjct 23379 AACCAGGTTCTCGTTGACAATTCCATCAGATGCGGCGAAGAAAGCAAGGACGTGTGAGAT 23320
Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394
||| | ||||||| |||||||| | | | ||||||| | |||||||||||| ||
Sbjct 23319 GAAGTATCGCTCGTCATCGTTCAATCTCTTGTTCCAGTCGTGAAGGTCCTTGGACAGATC 23260
Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| |||||| | ||||| || ||||| || ||||| ||||||||
Sbjct 23259 AATCTCCTCAGCAGTCCAGAAGGACGCTTCAGCTTTCTTGTACAT 23215
>seq1950
Length=170036
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || ||||| || || ||||||||| |||| || ||| | |
Sbjct 63252 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCA 63311
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || || | ||||| ||||| ||||| |||||||
Sbjct 63312 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCCGACCAG 63371
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | ||| ||||| || || || || | || ||||| ||| ||||||
Sbjct 63372 CAGCGCTTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGATTACAAC 63431
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| | || ||||| | || || |||
Sbjct 63432 ATCCAGAAGGAGTCCACTCTGCACCTTGTCCTTCGT 63467
Score = 96.9 bits (106), Expect = 3e-15
Identities = 104/135 (77%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| || || | ||||| ||||| ||||| | ||| || || ||||| ||
Sbjct 63578 GACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAG 63637
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455
|||| || || || | ||||||||||||||| ||||| ||| || ||||| ||||||||
Sbjct 63638 GACGGCCGGACACTGAGCGACTACAACATCCAGAAGGAGAGC-ACTCTGCACTTGGTGCT 63696
Query 38456 GCGTTTGAGAGGCGG 38470
||| || | || ||
Sbjct 63697 TCGTCTGCGTGGTGG 63711
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/169 (73%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| ||||||||| |||| || ||| || |||||| | | || | | ||||
Sbjct 63048 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATG--TGAAGA 63105
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||||||||| | || || ||||| ||||||| ||| ||||
Sbjct 63106 GCAAGATCCAGGACAAGGAGGGAATTCCTCCGGATCAGCAGCGTCTCATTTTCGCCGGCA 63165
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
| || || || |||| ||||| || || ||||| || || |||||
Sbjct 63166 AGCAACTCGAGGACGGCCGCACTCTTTCTGATTACAATATTCAGAAGGA 63214
>seq1821
Length=46945
Score = 95.1 bits (104), Expect = 1e-14
Identities = 133/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| | || |||||| || |||||| |
Sbjct 19120 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACAATC 19179
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| || | | |||| || |||| ||||| |||||||| || | || || ||||| |
Sbjct 19180 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGATCAGCAGCGTC 19237
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| || | ||| || || ||| |||| || | ||||| | ||||||||||||||||
Sbjct 19238 TGATCTTCGCTGGAAAGCAGTTGGAGGATGGCCGCACTTTGTCTGACTACAACATCCAAA 19297
Query 38431 AGG 38433
|||
Sbjct 19298 AGG 19300
>seq2084
Length=280932
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| |||||||| || | ||||| ||||| | || | ||| ||||| ||||| ||
Sbjct 181183 GACAAGGAGGGAATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 181242
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | ||||||||| |||||||||||||| ||||| |||| || || |||| ||
Sbjct 181243 GATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTCCTC 181302
Query 38457 CG 38458
||
Sbjct 181303 CG 181304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500156381827840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |