Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2106 264 1e-65 seq1950 96.9 3e-15 seq1821 95.1 1e-14 seq2084 86.0 6e-12 >seq2106 Length=142898 Score = 264 bits (292), Expect = 1e-65 Identities = 560/825 (68%), Gaps = 17/825 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| ||||| || || || || ||||| |||||| | ||| || || || ||||| Sbjct 24032 TTCTCGAAAAAGTTGGTCTTGCCG-CCAAGAGAAATGTTCTCCATGAAGTCGAATGGGTT 23974 Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 || | ||||||| ||| | |||||| | | || | ||| | ||| || || || Sbjct 23973 GGTGGCGTTGTAGAACTTCTGGTTGCCGAGT--GCCAACAA-CAGACGGTCTGCGACAAA 23917 Query 132741 CTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTT 132799 ||||||||| || ||||| | || ||| | | | || || || || || ||||| | Sbjct 23916 CTCGATGTACTGGCACATGAGCTTGGCATTCATG-CCGAGGAGCATGACGGGGAGCGCAT 23858 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | ||||| || |||||| || ||||| || ||| || ||| | ||| | | | Sbjct 23857 CTGTGAGGAATTCTTGCTCAATTGCGACAGCCTCGACGATGATGCTCTGCACGAGTGATG 23798 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 || |||| | | | || ||||| || ||| || ||||| |||| ||||| Sbjct 23797 CGTCCGGCTTGTTCTTGAGGTGGGAGAACAGCAGGCACGCGAAGTCTGTGTGCATGCCCT 23738 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 |||| | || || | |||||| ||| || | |||| |||||| || || || || | Sbjct 23737 CGTCACGCGAGATCAATTCGTTCGAGAACGTGAGACCGGCCATGAGACCACGCTTCTTCA 23678 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 ||| || |||| ||||| || || ||||||| |||||||| || |||||||| | Sbjct 23677 ACCAGAAGATGGACGCGAACGACCCAGAGAAGAAGATACCCTCGACAGCAGCGAAAGCGA 23618 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 ||| || | | || || | | ||| | |||||| |||| ||||| || |||| Sbjct 23617 TCAGTCGGCAGGCAAAGGTCGAATTCTTGTCAGAGATCCATCGCAATGCCCAGTCAGCCT 23558 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGG 133159 | | || || || || | ||||||||||| || | | | || || | || Sbjct 23557 TCTTACGGATACATGGGATGTTATCGATGGCGTTGAAGAGAT--ATGATCGCTGCTTGGG 23500 Query 133160 AACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGC 133217 ||| | |||||||||||| || || || |||||||||| | ||||||||| Sbjct 23499 TTCGCTGATGTAGGTGTCGATAAGCAGGGAGTATGTTTCCGAGTGGATGTTCTCCATCAT 23440 Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || || ||||| ||||| || || || | ||| ||||| ||||||||| Sbjct 23439 GATCTGGAATCCGTAGAAGCATCGTGCTTCAGGTATCTGTACTTCACTGCTGAAACGCTC 23380 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || |||||||| || || || |||||||| || || || ||||| ||| Sbjct 23379 AACCAGGTTCTCGTTGACAATTCCATCAGATGCGGCGAAGAAAGCAAGGACGTGTGAGAT 23320 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| | ||||||| |||||||| | | | ||||||| | |||||||||||| || Sbjct 23319 GAAGTATCGCTCGTCATCGTTCAATCTCTTGTTCCAGTCGTGAAGGTCCTTGGACAGATC 23260 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | |||||| | ||||| || ||||| || ||||| |||||||| Sbjct 23259 AATCTCCTCAGCAGTCCAGAAGGACGCTTCAGCTTTCTTGTACAT 23215 >seq1950 Length=170036 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || ||||||||| |||| || ||| | | Sbjct 63252 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCA 63311 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| ||||| ||||||| Sbjct 63312 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCCGACCAG 63371 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| || || || || | || ||||| ||| |||||| Sbjct 63372 CAGCGCTTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGATTACAAC 63431 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || ||||| | || || ||| Sbjct 63432 ATCCAGAAGGAGTCCACTCTGCACCTTGTCCTTCGT 63467 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || | ||||| ||||| ||||| | ||| || || ||||| || Sbjct 63578 GACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAG 63637 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 |||| || || || | ||||||||||||||| ||||| ||| || ||||| |||||||| Sbjct 63638 GACGGCCGGACACTGAGCGACTACAACATCCAGAAGGAGAGC-ACTCTGCACTTGGTGCT 63696 Query 38456 GCGTTTGAGAGGCGG 38470 ||| || | || || Sbjct 63697 TCGTCTGCGTGGTGG 63711 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| ||||||||| |||| || ||| || |||||| | | || | | |||| Sbjct 63048 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATG--TGAAGA 63105 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||||||||| | || || ||||| ||||||| ||| |||| Sbjct 63106 GCAAGATCCAGGACAAGGAGGGAATTCCTCCGGATCAGCAGCGTCTCATTTTCGCCGGCA 63165 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | || || || |||| ||||| || || ||||| || || ||||| Sbjct 63166 AGCAACTCGAGGACGGCCGCACTCTTTCTGATTACAATATTCAGAAGGA 63214 >seq1821 Length=46945 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 19120 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACAATC 19179 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| |||||||| || | || || ||||| | Sbjct 19180 GACAATG--TCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCGGATCAGCAGCGTC 19237 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| || || ||| |||| || | ||||| | |||||||||||||||| Sbjct 19238 TGATCTTCGCTGGAAAGCAGTTGGAGGATGGCCGCACTTTGTCTGACTACAACATCCAAA 19297 Query 38431 AGG 38433 ||| Sbjct 19298 AGG 19300 >seq2084 Length=280932 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||| || | ||||| ||||| | || | ||| ||||| ||||| || Sbjct 181183 GACAAGGAGGGAATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 181242 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||||||| |||||||||||||| ||||| |||| || || |||| || Sbjct 181243 GATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTCCTC 181302 Query 38457 CG 38458 || Sbjct 181303 CG 181304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500156381827840