Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2106 127 2e-24 >seq2106 Length=142898 Score = 127 bits (140), Expect = 2e-24 Identities = 341/521 (65%), Gaps = 3/521 (1%) Strand=Plus/Minus Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056 |||||||| || || || || | ||| | ||| || || | || || |||||||| || Sbjct 23726 ATCAATTCGTTCGAGAACGTGAGACCGGCCATGAGACCACGCTTCTTCAACCAGAAGATG 23667 Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116 || || || || ||||| ||||| ||||| || || || || ||||| | |||| Sbjct 23666 GACGCGAACGACCCAGAGAAGAAGATACCCTCGACAGCAGCGAAAGCGATCAGTCGGCAG 23607 Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 || | | | || || | | |||||| || |||||| ||||||||||| | | Sbjct 23606 GCAAAGGTCGAATTCTTGTCAGAGATCCATCGCAATGCCCAGTCAGCCTTCTTACGGATA 23547 Query 19177 CATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATAT 19236 ||||| || | || || | || || ||||| |||| | | || | | || Sbjct 23546 CATGGGATGTTATCGATGGCGTTGAAGAGATATGATCGCTGCTTGGGTTCGCTGATGTAG 23487 Query 19237 GCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCG 19296 | || || | | ||| |||| || || || || || || ||||| |||||| Sbjct 23486 GTGTCGATAAGCAGGGAGTATGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAATCCG 23427 Query 19297 TAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCA 19356 || || |||| |||||| | ||||||||||||||| | || | || |||| || || Sbjct 23426 TAGAAGCATCGTGCTTCAGGTATCTGTACTTCACTGCTGAAACGCTCAACCAGGTTCTCG 23367 Query 19357 TTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416 || || ||||||||| || || || || || | || ||| || || | | || Sbjct 23366 TTGACAATTCCATCAGATGCGGCGAAGAAAGCAAGGACGTGTGAGATGAAGTATCGCTCG 23307 Query 19417 TCTGAGGTTAAT---GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACT 19473 || | | ||| | ||||| || | || || || || | ||| | || ||| | Sbjct 23306 TCATCGTTCAATCTCTTGTTCCAGTCGTGAAGGTCCTTGGACAGATCAATCTCCTCAGCA 23247 Query 19474 GTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 ||||| || || || || ||||| || ||||| | |||||| Sbjct 23246 GTCCAGAAGGACGCTTCAGCTTTCTTGTACATCTGCCATAT 23206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090348778640