Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2106 143 3e-28
seq1852 131 2e-24
seq635 122 1e-21
seq1828 113 6e-19
>seq2106
Length=142898
Score = 143 bits (158), Expect = 3e-28
Identities = 177/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| ||||||||||||||||||||| | || || ||
Sbjct 24056 GCCTTCTGGTAGTCACCAACACGCTTCTCGAAAAAGTTGGTCTTGCCGCCAAGAGAAATG 23997
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | | ||||| | |
Sbjct 23996 TTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGAGTGCCAAC 23937
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
| ||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 23936 AACAGACGGTCTGCGACAAACTCGATGTACTGGCACATGAGCTTGGCATTCATGCCGAGG 23877
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
||| || || |||| || | | || |||| ||| || |||| ||||||||||||
Sbjct 23876 AGCATGACGGGGAGCGCATCTGTGAGGAATTCTTGCTCAATTGCGACAGCCTCGACGATG 23817
Query 868931 AT 868932
||
Sbjct 23816 AT 23815
>seq1852
Length=61578
Score = 131 bits (144), Expect = 2e-24
Identities = 107/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230
|| ||| | ||||| || ||||||||| | ||||||||| |||| |||||| | || |||
Sbjct 4499 TTCGAGATCATCCTTGCTGCCAACTACATGGACATCAAGGCTCTTCTCGATGTCGGCTGC 4440
Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290
||| | || || |||||||||||||||||||| || ||||| ||||||||||| || |||
Sbjct 4439 AAGACGGTTGCGAACATGATCAAGGGCAAGTCCCCAGAGGAAATCCGCAAGACGTTCAAC 4380
Query 1592291 ATCAAGTACG 1592300
||| || |||
Sbjct 4379 ATCCAGAACG 4370
>seq635
Length=74236
Score = 122 bits (134), Expect = 1e-21
Identities = 183/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| |||||||| || |||| ||| |||| ||||||||||| || || ||||||||
Sbjct 35576 CTGGTCAACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAACCAGTCCGTTGGA 35635
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||| ||||| | | || | ||| | ||||| | ||| || | ||
Sbjct 35636 TGTGCCGTTCGTGCCTCCGATATACGAGCCAGTCGCGCGGATGCGGTGGACGTTGAGACC 35695
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || || ||| ||||| | || || ||||| ||||||||||| |||||
Sbjct 35696 AATGCCTCCTGCGTTCTTTGAGATCATGGCACAAGTCTTGAGAGTGTCGTAGATACCCTC 35755
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| || | |||||| || | | || | | | ||| ||
Sbjct 35756 GATGCTGTCATCCTTCATGTCGACCAAAAAGCATGAGGCGAGCTGAGCATTAGGCGTACC 35815
Query 1630305 GGCGTTGAAGAGCGTGGGCG 1630324
||| |||| ||||||||||
Sbjct 35816 AGCGCTGAAAAGCGTGGGCG 35835
>seq1828
Length=194177
Score = 113 bits (124), Expect = 6e-19
Identities = 287/433 (66%), Gaps = 8/433 (2%)
Strand=Plus/Minus
Query 18059 ACATGAGCACATTCGGCAAGGTATTTAGG-GTCACCACCTTTGGCGAGTCGCACGGGGCG 18117
||||| || || ||| || ||||| | || ||||| | ||||| ||||| ||
Sbjct 85233 ACATGTCGACCTTTGGCCAG-TATTTCCGCGTAACCACGTACGGCGAATCGCATGGCAAA 85175
Query 18118 GGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATC 18177
||||||||||| | |||||||| ||||| | | || | || | || |||
Sbjct 85174 TCTGTCGGCTGCATTGTTGACGGCGTTCCGCCTGGGCTCGAGCTCACAGAAGATGATATC 85115
Query 18178 CAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAG 18237
|| || || || ||| |||||||| |||||| |||||| |||| || || |||||
Sbjct 85114 CAACCACAAATGACTCGTCGCCGACCTGGCCAGTCCGCACTCACCACACCACGAGACGAG 85055
Query 18238 CCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTC 18297
|||||||| || ||||| ||||| ||||| ||| ||||||| ||| ||||| ||
Sbjct 85054 AAAGATCGCGTAGAGATTCAGTCCGGCACAGAGAAGGGCATCACGCTTGGCACGCCCATC 84995
Query 18298 GGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT-----TCCGAC-ATGTGC 18351
| || || || ||||| |||| |||||| | ||| ||| |
Sbjct 84994 GCACTGCGAGTCATGAATGAAGACCAAAGGCCAAAAGACTATGGCAGCCGGACTATGGAC 84935
Query 18352 AAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411
| | || || || || |||||||| | || ||| ||| ||||||||| | ||||||
Sbjct 84934 ATGTACCCACGACCTTCCCACGCCGATTGGACATACTTGGAGAAGTACGGCGTGAAGGCG 84875
Query 18412 TCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCG 18471
|| || || || || |||| ||| || ||||| || || || || | |||
Sbjct 84874 TCCTCTGGTGGTGGAAGGTCAAGTGCGCGAGAGACGATCGGACGAGTTGCAAGTGCCGCT 84815
Query 18472 GTCGCCGAGAAAT 18484
|||| |||||||
Sbjct 84814 ATCGCAGAGAAAT 84802
Score = 87.8 bits (96), Expect = 2e-11
Identities = 113/155 (73%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 19041 CAAG-AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCT 19099
|||| |||| ||||| ||||| || ||||| || || | ||| ||| ||| |
Sbjct 84575 CAAGCAGGATAGCATTGGCGGTACCGTGACTTGTGTCATCAGAAACACGCCCAGCGGCTT 84516
Query 19100 CGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCC 19159
|||||||| |||||||||||| | ||||| ||| || || || |||||| || ||
Sbjct 84515 GGGCGAGCCATGCTTTGACAAGCTGGAGGCAAAGCTGGCGCATGCTATGCTGAGCATTCC 84456
Query 19160 GGCCACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194
|| ||||| ||||| ||||| || ||||| ||||
Sbjct 84455 TGCAACCAAAGGATTTGAGATCGGTAGCGGATTTG 84421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106923698142442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |