Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2106 143 3e-28 seq1852 131 2e-24 seq635 122 1e-21 seq1828 113 6e-19 >seq2106 Length=142898 Score = 143 bits (158), Expect = 3e-28 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||||||||||||||||||||| | || || || Sbjct 24056 GCCTTCTGGTAGTCACCAACACGCTTCTCGAAAAAGTTGGTCTTGCCGCCAAGAGAAATG 23997 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| | | ||||| | | Sbjct 23996 TTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGAGTGCCAAC 23937 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | ||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||| | Sbjct 23936 AACAGACGGTCTGCGACAAACTCGATGTACTGGCACATGAGCTTGGCATTCATGCCGAGG 23877 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| || || |||| || | | || |||| ||| || |||| |||||||||||| Sbjct 23876 AGCATGACGGGGAGCGCATCTGTGAGGAATTCTTGCTCAATTGCGACAGCCTCGACGATG 23817 Query 868931 AT 868932 || Sbjct 23816 AT 23815 >seq1852 Length=61578 Score = 131 bits (144), Expect = 2e-24 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230 || ||| | ||||| || ||||||||| | ||||||||| |||| |||||| | || ||| Sbjct 4499 TTCGAGATCATCCTTGCTGCCAACTACATGGACATCAAGGCTCTTCTCGATGTCGGCTGC 4440 Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290 ||| | || || |||||||||||||||||||| || ||||| ||||||||||| || ||| Sbjct 4439 AAGACGGTTGCGAACATGATCAAGGGCAAGTCCCCAGAGGAAATCCGCAAGACGTTCAAC 4380 Query 1592291 ATCAAGTACG 1592300 ||| || ||| Sbjct 4379 ATCCAGAACG 4370 >seq635 Length=74236 Score = 122 bits (134), Expect = 1e-21 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| |||| ||||||||||| || || |||||||| Sbjct 35576 CTGGTCAACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAACCAGTCCGTTGGA 35635 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||| ||||| | | || | ||| | ||||| | ||| || | || Sbjct 35636 TGTGCCGTTCGTGCCTCCGATATACGAGCCAGTCGCGCGGATGCGGTGGACGTTGAGACC 35695 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || || ||| ||||| | || || ||||| ||||||||||| ||||| Sbjct 35696 AATGCCTCCTGCGTTCTTTGAGATCATGGCACAAGTCTTGAGAGTGTCGTAGATACCCTC 35755 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || | |||||| || | | || | | | ||| || Sbjct 35756 GATGCTGTCATCCTTCATGTCGACCAAAAAGCATGAGGCGAGCTGAGCATTAGGCGTACC 35815 Query 1630305 GGCGTTGAAGAGCGTGGGCG 1630324 ||| |||| |||||||||| Sbjct 35816 AGCGCTGAAAAGCGTGGGCG 35835 >seq1828 Length=194177 Score = 113 bits (124), Expect = 6e-19 Identities = 287/433 (66%), Gaps = 8/433 (2%) Strand=Plus/Minus Query 18059 ACATGAGCACATTCGGCAAGGTATTTAGG-GTCACCACCTTTGGCGAGTCGCACGGGGCG 18117 ||||| || || ||| || ||||| | || ||||| | ||||| ||||| || Sbjct 85233 ACATGTCGACCTTTGGCCAG-TATTTCCGCGTAACCACGTACGGCGAATCGCATGGCAAA 85175 Query 18118 GGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATC 18177 ||||||||||| | |||||||| ||||| | | || | || | || ||| Sbjct 85174 TCTGTCGGCTGCATTGTTGACGGCGTTCCGCCTGGGCTCGAGCTCACAGAAGATGATATC 85115 Query 18178 CAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAG 18237 || || || || ||| |||||||| |||||| |||||| |||| || || ||||| Sbjct 85114 CAACCACAAATGACTCGTCGCCGACCTGGCCAGTCCGCACTCACCACACCACGAGACGAG 85055 Query 18238 CCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTC 18297 |||||||| || ||||| ||||| ||||| ||| ||||||| ||| ||||| || Sbjct 85054 AAAGATCGCGTAGAGATTCAGTCCGGCACAGAGAAGGGCATCACGCTTGGCACGCCCATC 84995 Query 18298 GGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT-----TCCGAC-ATGTGC 18351 | || || || ||||| |||| |||||| | ||| ||| | Sbjct 84994 GCACTGCGAGTCATGAATGAAGACCAAAGGCCAAAAGACTATGGCAGCCGGACTATGGAC 84935 Query 18352 AAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411 | | || || || || |||||||| | || ||| ||| ||||||||| | |||||| Sbjct 84934 ATGTACCCACGACCTTCCCACGCCGATTGGACATACTTGGAGAAGTACGGCGTGAAGGCG 84875 Query 18412 TCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCG 18471 || || || || || |||| ||| || ||||| || || || || | ||| Sbjct 84874 TCCTCTGGTGGTGGAAGGTCAAGTGCGCGAGAGACGATCGGACGAGTTGCAAGTGCCGCT 84815 Query 18472 GTCGCCGAGAAAT 18484 |||| ||||||| Sbjct 84814 ATCGCAGAGAAAT 84802 Score = 87.8 bits (96), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 19041 CAAG-AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCT 19099 |||| |||| ||||| ||||| || ||||| || || | ||| ||| ||| | Sbjct 84575 CAAGCAGGATAGCATTGGCGGTACCGTGACTTGTGTCATCAGAAACACGCCCAGCGGCTT 84516 Query 19100 CGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCC 19159 |||||||| |||||||||||| | ||||| ||| || || || |||||| || || Sbjct 84515 GGGCGAGCCATGCTTTGACAAGCTGGAGGCAAAGCTGGCGCATGCTATGCTGAGCATTCC 84456 Query 19160 GGCCACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194 || ||||| ||||| ||||| || ||||| |||| Sbjct 84455 TGCAACCAAAGGATTTGAGATCGGTAGCGGATTTG 84421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106923698142442