Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1884 143 4e-28
seq2106 131 3e-24
seq1852 122 1e-21
seq635 104 4e-16
seq957 96.9 5e-14
seq2050 86.0 1e-10
>seq1884
Length=194761
Score = 143 bits (158), Expect = 4e-28
Identities = 187/255 (73%), Gaps = 3/255 (1%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| || || |||||||||||| | || || || || |||
Sbjct 161097 GTACTTGGTGACGGCCTTGGTGCCTTCAGAGACGGCGTGCTTCGCAAGCTCACCAGGCAG 161156
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590
||||| || |||| ||||||||| ||||||| ||| || |||||| || |
Sbjct 161157 GATCAATCGTACGGAGGTCTGGATTTCGCGGGAAGAGATGGTCGACTTCTTGTT-GTATG 161215
Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || | ||||| ||| | | ||| |||| ||||||||||| || |||||||
Sbjct 161216 CAGCGAGCTTGGATGCCTCAGTGGCCACGCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 161275
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
||| ||||| | ||||||||| || ||| ||||| ||||||||||| | || |
Sbjct 161276 GGATGGACATAGCACGGTTGGAGATACCGGTGTCTGGGTGAACCTGCTTGAGGA-CTGGA 161334
Query 1485710 AAACAAAGGACGAGT 1485724
|| ||| |||| ||
Sbjct 161335 GAAGAAAAGACGCGT 161349
>seq2106
Length=142898
Score = 131 bits (144), Expect = 3e-24
Identities = 179/250 (72%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || || || ||| ||||||||||||||||||||| | |
Sbjct 24064 TGACACCAGCCTTCTGGTAGTCACCAACACGCTTCTCGAAAAAGTTGGTCTTGCCGCCAA 24005
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| || || |||||| | ||| ||||||| | |||| ||||| | ||||
Sbjct 24004 GAGAAATGTTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGA 23945
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | | ||| ||||| ||||| || || ||||||||||||||||| ||| ||||
Sbjct 23944 GTGCCAACAACAGACGGTCTGCGACAAACTCGATGTACTGGCACATGAGCTTGGCATTCA 23885
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| |||| ||||| |||| || ||| || |||| ||| || |||| ||||
Sbjct 23884 TGCCGAGGAGCATGACGGGGAGCGCATCTGTGAGGAATTCTTGCTCAATTGCGACAGCCT 23825
Query 794131 CGATGATGAT 794140
||| ||||||
Sbjct 23824 CGACGATGAT 23815
Score = 109 bits (120), Expect = 9e-18
Identities = 227/330 (69%), Gaps = 11/330 (3%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| || |||||||||||| || ||| |||| |||||| || ||||||
Sbjct 23741 CCCTCGTCACGCGAGATCAATTCGTTCGAGAACGTGAGACCGGCCATGAGACCACGCTTC 23682
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCC-GAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
|| | ||| ||||||| || ||| ||| ||||| ||||| |||||||| || || ||
Sbjct 23681 TTCAACCAGAAGATGG-ACGCGAACGACCCAGAGAAGAAGATACCCTCGACAGCAGCGAA 23623
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
||| || || |||||| || | | | | | | |||||| || |||||
Sbjct 23622 AGCGATCAGTCGGCAGGCAAAGGT--CGAATTCTTGTCAGA-GATCCATCGCAATGCCCA 23566
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT--GGTC-CTT 794576
|| ||||| || | | | || | | ||||||||| ||||| | | || ||
Sbjct 23565 GTCAGCCTTCTTACGGATACATGGGATGTTATCGATGGCGTTGAAGAGATATGATCGCTG 23506
Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636
|| | || || ||| |||||||||||| || || ||||| || || |||||||||||
Sbjct 23505 CTTG---GGTTCGCTGATGTAGGTGTCGATAAGCAGGGAGTATGTTTCCGAGTGGATGTT 23449
Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|| || ||||||||| || || |||||
Sbjct 23448 CTCCATCATGATCTGGAATCCGTAGAAGCA 23419
>seq1852
Length=61578
Score = 122 bits (134), Expect = 1e-21
Identities = 105/130 (81%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691
|| ||| | ||||| || ||||||||| | ||||||||| | || |||||| | || |||
Sbjct 4499 TTCGAGATCATCCTTGCTGCCAACTACATGGACATCAAGGCTCTTCTCGATGTCGGCTGC 4440
Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751
||||| || || ||| | |||||||||||||| || ||||| ||||||||||| || |||
Sbjct 4439 AAGACGGTTGCGAACATGATCAAGGGCAAGTCCCCAGAGGAAATCCGCAAGACGTTCAAC 4380
Query 2035752 ATCAAGTACG 2035761
||| || |||
Sbjct 4379 ATCCAGAACG 4370
>seq635
Length=74236
Score = 104 bits (114), Expect = 4e-16
Identities = 179/260 (69%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||| || ||||| || |||| ||| |||| ||||||||||| || || ||||||||
Sbjct 35576 CTGGTCAACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAACCAGTCCGTTGGA 35635
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||| ||||| | | || | ||| | ||||| | ||| || | ||
Sbjct 35636 TGTGCCGTTCGTGCCTCCGATATACGAGCCAGTCGCGCGGATGCGGTGGACGTTGAGACC 35695
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| || || ||| ||||| | || || | || || || |||||||| |||||
Sbjct 35696 AATGCCTCCTGCGTTCTTTGAGATCATGGCACAAGTCTTGAGAGTGTCGTAGATACCCTC 35755
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || |||||| || | | || | | ||| ||
Sbjct 35756 GATGCTGTCATCCTTCATGTCGACCAAAAAGCATGAGGCGAGCTGAGCATTAGGCGTACC 35815
Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799
|| |||| ||||||||||
Sbjct 35816 AGCGCTGAAAAGCGTGGGCG 35835
>seq957
Length=166961
Score = 96.9 bits (106), Expect = 5e-14
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 2411842 TTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGA 2411901
||||||||| | | ||||| ||||| ||||||| | |||| ||| || || |||
Sbjct 125096 TTGTCGAGGAAGCCATGCACATCGGCCAAGAGGACCTTCACTTCACAGCCAGCAGCCAGA 125155
Query 2411902 AAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGC 2411960
|| ||||| | ||| | || || || |||||||| ||| || |||||||| |||| ||
Sbjct 125156 AACTCGGCGATTTTGAGCATAGGAACGAAGTAGCCGCAG-TGAGGCTTGCCGGTCGTTGC 125214
Query 2411961 GGTGCCCCAATAAATGCAGAGAGGGCGCTC 2411990
||||||||| || |||| ||||| |||||
Sbjct 125215 GGTGCCCCAGTAGATGCGCAGAGGCCGCTC 125244
>seq2050
Length=198407
Score = 86.0 bits (94), Expect = 1e-10
Identities = 114/156 (73%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 431094 ATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATC 431153
|| || || || || |||||| | ||||| |||||||||||||||||||| || |||||
Sbjct 60741 ATGGGAGGTCGTGAAGGTCTCATTGACACCGCCGTCAAGACGGCCGAGACTGGTTACATT 60800
Query 431154 CAGCGTCGGTGCATCAAATCGATGGAGAGCCTGCA-GATCAAGCGCGGCGGCCTCGTGCG 431212
|||||||| ||||| || | || || || ||||||| || || ||||||
Sbjct 60801 CAGCGTCGACTGGTCAAAGCGCTCGA-AGAAATCATGATCAAGTACGATGGTACCGTGCG 60859
Query 431213 CAACGCCAACGGCGACATTGTCCAGTTTGCCTATGG 431248
|| | |||||||||| | ||||| |||||||
Sbjct 60860 GAATTCACTCGGCGACATTCTACAGTTCACCTATGG 60895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915967060402814
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |