Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1884 143 4e-28 seq2106 131 3e-24 seq1852 122 1e-21 seq635 104 4e-16 seq957 96.9 5e-14 seq2050 86.0 1e-10 >seq1884 Length=194761 Score = 143 bits (158), Expect = 4e-28 Identities = 187/255 (73%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| || || |||||||||||| | || || || || ||| Sbjct 161097 GTACTTGGTGACGGCCTTGGTGCCTTCAGAGACGGCGTGCTTCGCAAGCTCACCAGGCAG 161156 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||||| || |||| ||||||||| ||||||| ||| || |||||| || | Sbjct 161157 GATCAATCGTACGGAGGTCTGGATTTCGCGGGAAGAGATGGTCGACTTCTTGTT-GTATG 161215 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | ||||| ||| | | ||| |||| ||||||||||| || ||||||| Sbjct 161216 CAGCGAGCTTGGATGCCTCAGTGGCCACGCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 161275 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||| ||||| | ||||||||| || ||| ||||| ||||||||||| | || | Sbjct 161276 GGATGGACATAGCACGGTTGGAGATACCGGTGTCTGGGTGAACCTGCTTGAGGA-CTGGA 161334 Query 1485710 AAACAAAGGACGAGT 1485724 || ||| |||| || Sbjct 161335 GAAGAAAAGACGCGT 161349 >seq2106 Length=142898 Score = 131 bits (144), Expect = 3e-24 Identities = 179/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| ||||||||||||||||||||| | | Sbjct 24064 TGACACCAGCCTTCTGGTAGTCACCAACACGCTTCTCGAAAAAGTTGGTCTTGCCGCCAA 24005 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | ||| ||||||| | |||| ||||| | |||| Sbjct 24004 GAGAAATGTTCTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGA 23945 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | ||| ||||| ||||| || || ||||||||||||||||| ||| |||| Sbjct 23944 GTGCCAACAACAGACGGTCTGCGACAAACTCGATGTACTGGCACATGAGCTTGGCATTCA 23885 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| |||| ||||| |||| || ||| || |||| ||| || |||| |||| Sbjct 23884 TGCCGAGGAGCATGACGGGGAGCGCATCTGTGAGGAATTCTTGCTCAATTGCGACAGCCT 23825 Query 794131 CGATGATGAT 794140 ||| |||||| Sbjct 23824 CGACGATGAT 23815 Score = 109 bits (120), Expect = 9e-18 Identities = 227/330 (69%), Gaps = 11/330 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || |||||||||||| || ||| |||| |||||| || |||||| Sbjct 23741 CCCTCGTCACGCGAGATCAATTCGTTCGAGAACGTGAGACCGGCCATGAGACCACGCTTC 23682 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCC-GAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || | ||| ||||||| || ||| ||| ||||| ||||| |||||||| || || || Sbjct 23681 TTCAACCAGAAGATGG-ACGCGAACGACCCAGAGAAGAAGATACCCTCGACAGCAGCGAA 23623 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||| || || |||||| || | | | | | | |||||| || ||||| Sbjct 23622 AGCGATCAGTCGGCAGGCAAAGGT--CGAATTCTTGTCAGA-GATCCATCGCAATGCCCA 23566 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT--GGTC-CTT 794576 || ||||| || | | | || | | ||||||||| ||||| | | || || Sbjct 23565 GTCAGCCTTCTTACGGATACATGGGATGTTATCGATGGCGTTGAAGAGATATGATCGCTG 23506 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | || || ||| |||||||||||| || || ||||| || || ||||||||||| Sbjct 23505 CTTG---GGTTCGCTGATGTAGGTGTCGATAAGCAGGGAGTATGTTTCCGAGTGGATGTT 23449 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || ||||||||| || || ||||| Sbjct 23448 CTCCATCATGATCTGGAATCCGTAGAAGCA 23419 >seq1852 Length=61578 Score = 122 bits (134), Expect = 1e-21 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691 || ||| | ||||| || ||||||||| | ||||||||| | || |||||| | || ||| Sbjct 4499 TTCGAGATCATCCTTGCTGCCAACTACATGGACATCAAGGCTCTTCTCGATGTCGGCTGC 4440 Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751 ||||| || || ||| | |||||||||||||| || ||||| ||||||||||| || ||| Sbjct 4439 AAGACGGTTGCGAACATGATCAAGGGCAAGTCCCCAGAGGAAATCCGCAAGACGTTCAAC 4380 Query 2035752 ATCAAGTACG 2035761 ||| || ||| Sbjct 4379 ATCCAGAACG 4370 >seq635 Length=74236 Score = 104 bits (114), Expect = 4e-16 Identities = 179/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || ||||| || |||| ||| |||| ||||||||||| || || |||||||| Sbjct 35576 CTGGTCAACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAACCAGTCCGTTGGA 35635 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||| ||||| | | || | ||| | ||||| | ||| || | || Sbjct 35636 TGTGCCGTTCGTGCCTCCGATATACGAGCCAGTCGCGCGGATGCGGTGGACGTTGAGACC 35695 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || || ||| ||||| | || || | || || || |||||||| ||||| Sbjct 35696 AATGCCTCCTGCGTTCTTTGAGATCATGGCACAAGTCTTGAGAGTGTCGTAGATACCCTC 35755 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || |||||| || | | || | | ||| || Sbjct 35756 GATGCTGTCATCCTTCATGTCGACCAAAAAGCATGAGGCGAGCTGAGCATTAGGCGTACC 35815 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 || |||| |||||||||| Sbjct 35816 AGCGCTGAAAAGCGTGGGCG 35835 >seq957 Length=166961 Score = 96.9 bits (106), Expect = 5e-14 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 2411842 TTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGA 2411901 ||||||||| | | ||||| ||||| ||||||| | |||| ||| || || ||| Sbjct 125096 TTGTCGAGGAAGCCATGCACATCGGCCAAGAGGACCTTCACTTCACAGCCAGCAGCCAGA 125155 Query 2411902 AAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGC 2411960 || ||||| | ||| | || || || |||||||| ||| || |||||||| |||| || Sbjct 125156 AACTCGGCGATTTTGAGCATAGGAACGAAGTAGCCGCAG-TGAGGCTTGCCGGTCGTTGC 125214 Query 2411961 GGTGCCCCAATAAATGCAGAGAGGGCGCTC 2411990 ||||||||| || |||| ||||| ||||| Sbjct 125215 GGTGCCCCAGTAGATGCGCAGAGGCCGCTC 125244 >seq2050 Length=198407 Score = 86.0 bits (94), Expect = 1e-10 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 431094 ATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATC 431153 || || || || || |||||| | ||||| |||||||||||||||||||| || ||||| Sbjct 60741 ATGGGAGGTCGTGAAGGTCTCATTGACACCGCCGTCAAGACGGCCGAGACTGGTTACATT 60800 Query 431154 CAGCGTCGGTGCATCAAATCGATGGAGAGCCTGCA-GATCAAGCGCGGCGGCCTCGTGCG 431212 |||||||| ||||| || | || || || ||||||| || || |||||| Sbjct 60801 CAGCGTCGACTGGTCAAAGCGCTCGA-AGAAATCATGATCAAGTACGATGGTACCGTGCG 60859 Query 431213 CAACGCCAACGGCGACATTGTCCAGTTTGCCTATGG 431248 || | |||||||||| | ||||| ||||||| Sbjct 60860 GAATTCACTCGGCGACATTCTACAGTTCACCTATGG 60895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915967060402814