Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1950 122 6e-23 seq2084 107 1e-18 seq1821 104 2e-17 >seq1950 Length=170036 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| || || || ||| | || |||| Sbjct 63463 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCC 63404 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || |||||||||| || |||||||| | || | ||||||||||| Sbjct 63403 TCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCC 63344 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | || | ||| || || | ||| |||||| Sbjct 63343 TGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTC 63284 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| |||||||| ||||| Sbjct 63283 TTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | || | || |||| ||| | |||||||||||||| ||||| ||||| Sbjct 63714 TTTCCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 63655 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || | || | || || || ||||| || |||||||| || || ||||||||| | Sbjct 63654 CTCAGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGT 63595 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGG 34922 || | ||||||||||| | || || ||||| |||| | || | ||| Sbjct 63594 GGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCC 63535 Query 34923 CCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||| || || ||||| || ||||| ||||| || ||||||||||| Sbjct 63534 ACTTCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480 >seq2084 Length=280932 Score = 107 bits (118), Expect = 1e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| |||||||| ||| |||| |||| Sbjct 181301 AGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCT 181242 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| || |||||||| | || | ||||||||||| Sbjct 181241 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 181183 >seq1821 Length=46945 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 |||| | |||| || ||||| ||||| || | |||| |||| |||| |||||||| Sbjct 19307 GTGCGCACCTTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCA 19248 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 ||||||||||| || ||||| || | || | ||||||||||| | || || ||| Sbjct 19247 GCGAAGATCAGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTG 19188 Query 34901 ACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAG 34956 || || | ||||| || || |||||| |||| ||| |||||||| ||||| || Sbjct 19187 AC--AT--TGTCGATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAG 19132 Query 34957 GGTCTTTACAAAG 34969 |||||| || ||| Sbjct 19131 GGTCTTGACGAAG 19119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325682376405494