Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2106 105 7e-18 seq1950 86.0 6e-12 >seq2106 Length=142898 Score = 105 bits (116), Expect = 7e-18 Identities = 352/537 (66%), Gaps = 17/537 (3%) Strand=Plus/Plus Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256 ||||||| ||||||| || || ||| | ||||| |||| || ||||||||| ||||| Sbjct 23522 TCAACGCCATCGATAACATCCCATGTATCCGTAAGAAGGCTGACTGGGCATTGCGATGGA 23581 Query 50257 CTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTG 50316 |||| || || || ||| || | | || || || || || ||| Sbjct 23582 TCTCTGACAAGAATTCGACCTTTGCCTGCCGACTGATCGCTTTCGCTGCTGTCGAGGGTA 23641 Query 50317 TGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCC 50375 | || || || || || || |||| || | | || || | | | | | ||| || Sbjct 23642 TCTTCTTCTCTGGGTCGTTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATGGCC 23700 Query 50376 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50435 || |||||||| ||||| ||||| ||||| ||||| || |||||||||||||| ||| Sbjct 23701 GGTCTCACGTTCTCGAACGAATTGATCTCGCGTGACGAGGGCATGCACACAGACTTCGCG 23760 Query 50436 TGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGA---C 50492 || || | | | | | | || ||| || | ||| | || | || | | Sbjct 23761 TGCCTGCTGTTCT---CCCACCTCAA-GAACAAGC--CGGACGCATCACTCGTGCAGAGC 23814 Query 50493 ATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCA 50552 || || || || |||| || || |||| || |||| || || | ||||| || Sbjct 23815 ATCATCGTCGAGGCTGTCGCAATTGAGCAAGAATTCCTCACAGATGCGCTCCCCGT--CA 23872 Query 50553 TTGT--TGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGAT 50610 | | | |||||||| || | | |||||| ||||||| |||||||| |||||| | Sbjct 23873 TGCTCCTCGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCAGACCGTC 23932 Query 50611 TGTTGTTGCAGCTGGGACAACC-GAAATACTATAATGCACGTAACCCCTTTCCGTTTATG 50669 |||||||| || || ||||| ||| | ||| || || ||||| || || ||| Sbjct 23933 TGTTGTTGGCACTCGG-CAACCAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATG 23991 Query 50670 AATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50726 | ||||| || | | ||||| || ||||||||||| | ||||| || || ||| Sbjct 23992 GAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGTGTTGGTGACTAC 24048 >seq1950 Length=170036 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 137221 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 137280 || || || |||||||| ||||||| ||| | ||| ||||| || |||||||| || Sbjct 63675 TCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAG 63616 Query 137281 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 137340 || || || ||||| || || || ||||| || ||||| ||| || || | | Sbjct 63615 ATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTG 63556 Query 137341 TCCACCGTGTCTGTGGGTTCTACTTCAA--CA---GTCACCGTCTTGCCGGTCAATGTTT 137395 || | ||||||| | ||| |||||| || || | ||||||||||| | ||| | Sbjct 63555 TCGATGGTGTCTGATGATTCCACTTCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCT 63496 Query 137396 TTACGAATATTTGCATA 137412 | ||||| || |||||| Sbjct 63495 TGACGAAGATCTGCATA 63479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488527963543200