Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq2106 105 7e-18
seq1950 86.0 6e-12
>seq2106
Length=142898
Score = 105 bits (116), Expect = 7e-18
Identities = 352/537 (66%), Gaps = 17/537 (3%)
Strand=Plus/Plus
Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256
||||||| ||||||| || || ||| | ||||| |||| || ||||||||| |||||
Sbjct 23522 TCAACGCCATCGATAACATCCCATGTATCCGTAAGAAGGCTGACTGGGCATTGCGATGGA 23581
Query 50257 CTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTG 50316
|||| || || || ||| || | | || || || || || |||
Sbjct 23582 TCTCTGACAAGAATTCGACCTTTGCCTGCCGACTGATCGCTTTCGCTGCTGTCGAGGGTA 23641
Query 50317 TGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCC 50375
| || || || || || || |||| || | | || || | | | | | ||| ||
Sbjct 23642 TCTTCTTCTCTGGGTCGTTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATGGCC 23700
Query 50376 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50435
|| |||||||| ||||| ||||| ||||| ||||| || |||||||||||||| |||
Sbjct 23701 GGTCTCACGTTCTCGAACGAATTGATCTCGCGTGACGAGGGCATGCACACAGACTTCGCG 23760
Query 50436 TGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGA---C 50492
|| || | | | | | | || ||| || | ||| | || | || | |
Sbjct 23761 TGCCTGCTGTTCT---CCCACCTCAA-GAACAAGC--CGGACGCATCACTCGTGCAGAGC 23814
Query 50493 ATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCA 50552
|| || || || |||| || || |||| || |||| || || | ||||| ||
Sbjct 23815 ATCATCGTCGAGGCTGTCGCAATTGAGCAAGAATTCCTCACAGATGCGCTCCCCGT--CA 23872
Query 50553 TTGT--TGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGAT 50610
| | | |||||||| || | | |||||| ||||||| |||||||| |||||| |
Sbjct 23873 TGCTCCTCGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCAGACCGTC 23932
Query 50611 TGTTGTTGCAGCTGGGACAACC-GAAATACTATAATGCACGTAACCCCTTTCCGTTTATG 50669
|||||||| || || ||||| ||| | ||| || || ||||| || || |||
Sbjct 23933 TGTTGTTGGCACTCGG-CAACCAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATG 23991
Query 50670 AATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50726
| ||||| || | | ||||| || ||||||||||| | ||||| || || |||
Sbjct 23992 GAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGTGTTGGTGACTAC 24048
>seq1950
Length=170036
Score = 86.0 bits (94), Expect = 6e-12
Identities = 138/197 (70%), Gaps = 5/197 (3%)
Strand=Plus/Minus
Query 137221 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 137280
|| || || |||||||| ||||||| ||| | ||| ||||| || |||||||| ||
Sbjct 63675 TCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAG 63616
Query 137281 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 137340
|| || || ||||| || || || ||||| || ||||| ||| || || | |
Sbjct 63615 ATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTG 63556
Query 137341 TCCACCGTGTCTGTGGGTTCTACTTCAA--CA---GTCACCGTCTTGCCGGTCAATGTTT 137395
|| | ||||||| | ||| |||||| || || | ||||||||||| | ||| |
Sbjct 63555 TCGATGGTGTCTGATGATTCCACTTCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCT 63496
Query 137396 TTACGAATATTTGCATA 137412
| ||||| || ||||||
Sbjct 63495 TGACGAAGATCTGCATA 63479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488527963543200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |