Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2106 172 8e-37
>seq2106
Length=142898
Score = 172 bits (190), Expect = 8e-37
Identities = 376/549 (68%), Gaps = 23/549 (4%)
Strand=Plus/Plus
Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831
|| ||||||| | |||||| | |||| | || || ||||| ||||| || |||||| | |
Sbjct 23202 GCAGATATGGCAGATGTACAAGAAAG-CTGAAGCGTCCTTCTGGACTGCTGAGGAGATTG 23260
Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCA 1455888
| || | ||| | ||||| | ||| ||| |||||||| | ||||
Sbjct 23261 ATCTGTCCAAGGACCTTCACGACTGGAACAAGAGATTGAACGATGACGAGCGATACTTCA 23320
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
|| |||||||| || ||| |||||||| ||||| || || |||||||||||
Sbjct 23321 TCTCACACGTCCTTGC-TTTCTTCGCCGCATCTGATGGAATTGTCAACGAGAACCTGGTT 23379
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| || || | | || || || | || || ||||| | || ||||| |||||||||
Sbjct 23380 GAGCGTTTCAGCAGTGAAGTACAGATACCTGAAGCACGATGCTTCTACGGATTCCAGATC 23439
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068
|| || ||||||||||| ||||| ||||| || || |||||||||||| ||| ||
Sbjct 23440 ATGATGGAGAACATCCACTCGGAAACATACTCCCTGCTTATCGACACCTACATCAGCGAA 23499
Query 1456069 CCGGTCGAGAAG-GACC--ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125
|| | || || || | | ||||| ||||||||| | | || | | | ||
Sbjct 23500 CC---CAAGCAGCGATCATATCTCTTCAACGCCATCGATAACATCCCATGTATCCGTAAG 23556
Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182
||||| |||||||| || |||||| ||||| | ||||| ||||||| |
Sbjct 23557 AAGGCTGACTGGGCATTGCGATGGATCTCTGACAAGAA----TTCGAC-CTTTGCCTGCC 23611
Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATC 1456240
| || ||| || || || |||||||| ||||| ||||| || ||| ||| |||||
Sbjct 23612 GACTGATCGCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGGTCGTTC-GCGTCCATC 23670
Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300
|| ||| | |||||||| || |||||| ||||||| | | | | |||||||| |||
Sbjct 23671 TTCTGGTTGAAGAAGCGTGGTCTCATGGCCGGTCTCACGTTCTCG-AACGAATTGATCTC 23729
Query 1456301 TCGCGACGA 1456309
|| |||||
Sbjct 23730 GCGTGACGA 23738
Score = 131 bits (144), Expect = 2e-24
Identities = 184/253 (73%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||||||||||| |||| || ||| |||| || ||| || |||| || || |
Sbjct 23815 ATCATCGTCGAGGCTGTCGCAATTGAGCAAGAATTCCTCACAGATGCGCTCCCCGTCATG 23874
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
||| |||||||||| |||| |||||||||||||||||| | | |||||||| ||||| |
Sbjct 23875 CTCCTCGGCATGAATGCCA-AGCTCATGTGCCAGTACATCG-AGTTTGTCGCAGACCGTC 23932
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|| | ||| |||||| | ||||| |||| | ||||||| ||| | |||
Sbjct 23933 TGTTGTTGGCACTCGGCAAC-CAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATG 23991
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761
||| || || || | ||||||||||||||||||||| || | ||| || |||
Sbjct 23992 GAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGTGTTGGTGACTACCAG 24051
Query 1456762 AAGGCCGGCGTCA 1456774
||||| || ||||
Sbjct 24052 AAGGCTGGTGTCA 24064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177557917473412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |