Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2106 172 8e-37 >seq2106 Length=142898 Score = 172 bits (190), Expect = 8e-37 Identities = 376/549 (68%), Gaps = 23/549 (4%) Strand=Plus/Plus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||||||| | |||||| | |||| | || || ||||| ||||| || |||||| | | Sbjct 23202 GCAGATATGGCAGATGTACAAGAAAG-CTGAAGCGTCCTTCTGGACTGCTGAGGAGATTG 23260 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCA 1455888 | || | ||| | ||||| | ||| ||| |||||||| | |||| Sbjct 23261 ATCTGTCCAAGGACCTTCACGACTGGAACAAGAGATTGAACGATGACGAGCGATACTTCA 23320 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || |||||||| || ||| |||||||| ||||| || || ||||||||||| Sbjct 23321 TCTCACACGTCCTTGC-TTTCTTCGCCGCATCTGATGGAATTGTCAACGAGAACCTGGTT 23379 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | | || || || | || || ||||| | || ||||| ||||||||| Sbjct 23380 GAGCGTTTCAGCAGTGAAGTACAGATACCTGAAGCACGATGCTTCTACGGATTCCAGATC 23439 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| ||||| ||||| || || |||||||||||| ||| || Sbjct 23440 ATGATGGAGAACATCCACTCGGAAACATACTCCCTGCTTATCGACACCTACATCAGCGAA 23499 Query 1456069 CCGGTCGAGAAG-GACC--ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 || | || || || | | ||||| ||||||||| | | || | | | || Sbjct 23500 CC---CAAGCAGCGATCATATCTCTTCAACGCCATCGATAACATCCCATGTATCCGTAAG 23556 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||| |||||||| || |||||| ||||| | ||||| ||||||| | Sbjct 23557 AAGGCTGACTGGGCATTGCGATGGATCTCTGACAAGAA----TTCGAC-CTTTGCCTGCC 23611 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATC 1456240 | || ||| || || || |||||||| ||||| ||||| || ||| ||| ||||| Sbjct 23612 GACTGATCGCTTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGGTCGTTC-GCGTCCATC 23670 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300 || ||| | |||||||| || |||||| ||||||| | | | | |||||||| ||| Sbjct 23671 TTCTGGTTGAAGAAGCGTGGTCTCATGGCCGGTCTCACGTTCTCG-AACGAATTGATCTC 23729 Query 1456301 TCGCGACGA 1456309 || ||||| Sbjct 23730 GCGTGACGA 23738 Score = 131 bits (144), Expect = 2e-24 Identities = 184/253 (73%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||||||||||| |||| || ||| |||| || ||| || |||| || || | Sbjct 23815 ATCATCGTCGAGGCTGTCGCAATTGAGCAAGAATTCCTCACAGATGCGCTCCCCGTCATG 23874 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| |||||||||| |||| |||||||||||||||||| | | |||||||| ||||| | Sbjct 23875 CTCCTCGGCATGAATGCCA-AGCTCATGTGCCAGTACATCG-AGTTTGTCGCAGACCGTC 23932 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 || | ||| |||||| | ||||| |||| | ||||||| ||| | ||| Sbjct 23933 TGTTGTTGGCACTCGGCAAC-CAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATG 23991 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| || || || | ||||||||||||||||||||| || | ||| || ||| Sbjct 23992 GAGAACATTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGTGTTGGTGACTACCAG 24051 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 24052 AAGGCTGGTGTCA 24064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177557917473412