Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 138 3e-27
seq1112 118 3e-21
>seq1950
Length=170036
Score = 138 bits (152), Expect = 3e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || ||||| || ||||| ||||| || || || || |||||
Sbjct 63482 CATACCACCACGGAGACGAAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATC 63423
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || ||||| || ||||| ||||| | || ||||| || ||
Sbjct 63422 GGACAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGG 63363
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || | || ||||| ||||| | || || | ||
Sbjct 63362 TGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTC 63303
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || | |||||||| || || || || ||||| || |||||
Sbjct 63302 AACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252
Score = 136 bits (150), Expect = 1e-26
Identities = 159/212 (75%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || ||||| || ||||| ||||| || |||||||| |
Sbjct 63258 TTTGCATACCACCACGCAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGT 63199
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
||||||| | || || || || || ||||| || || || || || ||||| |||||||
Sbjct 63198 AATCAGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGAT 63139
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| ||||||||||| || || ||||| || || ||| || ||||| || || | || ||
Sbjct 63138 CCGGAGGAATTCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATAGTGTCGGAG 63080
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
| ||||| || || || | ||||| |||||
Sbjct 63079 GACTCAACCTCGAGGGTGATGGTCTTGCCGGT 63048
Score = 95.1 bits (104), Expect = 4e-14
Identities = 160/232 (69%), Gaps = 5/232 (2%)
Strand=Plus/Minus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || | || ||||| ||| || || || || || ||
Sbjct 63711 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 63652
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| ||| || || || || || || || ||||| ||||| || || ||||| || || ||
Sbjct 63651 AGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGG 63592
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| || || || || ||||| || | || ||||| || || | || |||| ||| |||
Sbjct 63591 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACT 63532
Query 140691 TCA-----AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| ||||| | ||||| ||||| ||||| || || || ||||||||
Sbjct 63531 TCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
>seq1112
Length=541625
Score = 118 bits (130), Expect = 3e-21
Identities = 230/339 (68%), Gaps = 3/339 (1%)
Strand=Plus/Plus
Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621
||||||||||| | || || | ||| | ||||| | || | || ||| | |||
Sbjct 80423 AAAATGAAGGAGGTCGCCGAGTCCTATCTTGGTGAGAAGGTTCACAACGCAGTTGTCACT 80482
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || ||||| || || || || ||||| |||| || || ||||| || | || ||
Sbjct 80483 GTTCCTGCCTACTTCAACGACGCTCAGCGCGCTGCCACCAAGGATGCCGGTACTATCGCA 80542
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | ||||| || || | | || ||||| ||||| || || | || || || ||
Sbjct 80543 GGCCTCAATGTGCTGCGAGTTGTCAACGAACCTACTGCCGCCGCTCTCGCCTACGGTCTC 80602
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
|| || || ||||| ||| | || | | | ||| | |||||||||||||||
Sbjct 80603 GACAA---GACTGACCGGGAACGCCAAATCATCGTCTACGATCTTGGTGGTGGTACTTTT 80659
Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861
|| || || | || || |||| |||| | || || ||| | || || ||||||||
Sbjct 80660 GACGTCTCCATCCTGACTGTTGACCAGGGTGTCTTCGAGGTTCAGGCTACGGCTGGTGAC 80719
Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTT 349900
|| ||||||||||| ||||| || ||| | ||| | |||
Sbjct 80720 ACCCATCTTGGTGGTGAAGACTTCGATCAGCGTGTAGTT 80758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515203418318678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |