Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1950 138 3e-27 seq1112 118 3e-21 >seq1950 Length=170036 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||| ||||| || || || || ||||| Sbjct 63482 CATACCACCACGGAGACGAAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATC 63423 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || ||||| || ||||| ||||| | || ||||| || || Sbjct 63422 GGACAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGG 63363 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || ||||| ||||| | || || | || Sbjct 63362 TGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTC 63303 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | |||||||| || || || || ||||| || ||||| Sbjct 63302 AACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252 Score = 136 bits (150), Expect = 1e-26 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || ||||| ||||| || |||||||| | Sbjct 63258 TTTGCATACCACCACGCAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGT 63199 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || || ||||| || || || || || ||||| ||||||| Sbjct 63198 AATCAGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGAT 63139 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | ||||||||||| || || ||||| || || ||| || ||||| || || | || || Sbjct 63138 CCGGAGGAATTCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATAGTGTCGGAG 63080 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | ||||| || || || | ||||| ||||| Sbjct 63079 GACTCAACCTCGAGGGTGATGGTCTTGCCGGT 63048 Score = 95.1 bits (104), Expect = 4e-14 Identities = 160/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | || ||||| ||| || || || || || || Sbjct 63711 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 63652 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | ||| || || || || || || || ||||| ||||| || || ||||| || || || Sbjct 63651 AGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGG 63592 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || || ||||| || | || ||||| || || | || |||| ||| ||| Sbjct 63591 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACT 63532 Query 140691 TCA-----AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | ||||| ||||| ||||| || || || |||||||| Sbjct 63531 TCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480 >seq1112 Length=541625 Score = 118 bits (130), Expect = 3e-21 Identities = 230/339 (68%), Gaps = 3/339 (1%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||||||| | || || | ||| | ||||| | || | || ||| | ||| Sbjct 80423 AAAATGAAGGAGGTCGCCGAGTCCTATCTTGGTGAGAAGGTTCACAACGCAGTTGTCACT 80482 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || || ||||| |||| || || ||||| || | || || Sbjct 80483 GTTCCTGCCTACTTCAACGACGCTCAGCGCGCTGCCACCAAGGATGCCGGTACTATCGCA 80542 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | ||||| || || | | || ||||| ||||| || || | || || || || Sbjct 80543 GGCCTCAATGTGCTGCGAGTTGTCAACGAACCTACTGCCGCCGCTCTCGCCTACGGTCTC 80602 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || || ||||| ||| | || | | | ||| | ||||||||||||||| Sbjct 80603 GACAA---GACTGACCGGGAACGCCAAATCATCGTCTACGATCTTGGTGGTGGTACTTTT 80659 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 || || || | || || |||| |||| | || || ||| | || || |||||||| Sbjct 80660 GACGTCTCCATCCTGACTGTTGACCAGGGTGTCTTCGAGGTTCAGGCTACGGCTGGTGAC 80719 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTT 349900 || ||||||||||| ||||| || ||| | ||| | ||| Sbjct 80720 ACCCATCTTGGTGGTGAAGACTTCGATCAGCGTGTAGTT 80758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515203418318678