Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1950 179 9e-40 seq1821 120 7e-22 seq635 120 7e-22 seq2084 107 4e-18 seq2007 104 5e-17 seq2167 87.8 4e-12 >seq1950 Length=170036 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||||||||| || |||||||| ||||| | ||||| | ||||| Sbjct 63463 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCC 63404 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| | ||| || ||||| || |||| || ||||||||| Sbjct 63403 TCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCC 63344 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || |||||||| || ||||||||||| ||||| ||| Sbjct 63343 TGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTC 63284 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| ||||| | ||||| Sbjct 63283 TTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||||||||| || || || || ||||| | ||| || | || || Sbjct 63235 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGAGTGCGGCCGTCC 63176 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || || || || || || ||||||| ||| ||||||||| Sbjct 63175 TCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCC 63116 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| ||||| ||| ||||||||||| ||||| ||| Sbjct 63115 TGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 63056 Query 211083 TTTCCCGT 211090 || || || Sbjct 63055 TTGCCGGT 63048 Score = 122 bits (134), Expect = 2e-22 Identities = 158/217 (73%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||| ||| || |||||||| || || || |||| || || Sbjct 63696 AGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCGTCC 63637 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| || ||||| || || | || |||||||| Sbjct 63636 TCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 63577 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA-GCTTTCA----ACCTCGAGAGTGA 211077 || ||||| || || || ||||||||||| || | || || || || || |||| Sbjct 63576 TGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACTTCACTTCAAGTGTGA 63517 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || ||||| ||||| || || | |||||| Sbjct 63516 TAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480 >seq1821 Length=46945 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| || || | | || | ||||| |||| |||||| || |||||||| Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || || || || || | ||| ||||||||||||||||| || || || ||| Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 19179 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 19178 ATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 19120 >seq635 Length=74236 Score = 120 bits (132), Expect = 7e-22 Identities = 197/283 (70%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||| | ||||| ||||| |||||| ||||| || Sbjct 35178 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAA---GCATCCTTGTACAGGATGAAAGGG 35234 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 || ||| | |||||| | || ||| | ||||| || ||| || ||||||||| Sbjct 35235 CCGCCAGTCTCGGTCTGAGCCTCAAGGATGGCGTACCAAATCTTCTGTGCGCGGACAGTC 35294 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | | |||| |||||||||| | ||| |||| ||||| ||| || ||| Sbjct 35295 TCACGGCCACGGCCTTGCTTCTCGTACTGCTCGTAAAGCTTTTCGAACTCCTCGCCGTAG 35354 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||||| ||||||| || |||||||||||| | ||| |||| | |||| |||| Sbjct 35355 ACATCGGCGAGACCAGGGCACTCATTGGGGCACATGAGGGTCCATTCGCCGTTCTCCTCA 35414 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 || || |||||||| || || | | |||| | || |||||| Sbjct 35415 ACACGCTTCATGAACAGATCTGGGATCCAAAGTGCGAAGAAAA 35457 >seq2084 Length=280932 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || |||| ||||| | |||||| Sbjct 181301 AGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCT 181242 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| | ||| || ||||| || || | ||| |||||||| Sbjct 181241 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 181183 >seq2007 Length=19708 Score = 104 bits (114), Expect = 5e-17 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| |||||||| ||||| | || ||||| ||||| ||||| ||| |||||||||| Sbjct 5914 CCTTC-TTGTCCTGAATCTTGGGCTTGACGTTGTCGATAGTGTCGGAGGATTCAACCTCG 5972 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| |||||||| ||||||||||| || || | ||| || Sbjct 5973 AGAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGTAT 6016 >seq2167 Length=8863 Score = 87.8 bits (96), Expect = 4e-12 Identities = 94/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT-TCCTTGTC 211021 || |||||||||| |||||||| | ||| || ||||| | |||| ||| ||||||| Sbjct 5536 TCAAGCTGCTTGCTAGCGAAGATCAAGCGCTGCTGGTCTGATGGAATACCTCTCCTTGTT 5595 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| ||||| | || ||||| ||||| ||||| || ||||||||||||| ||| | Sbjct 5596 CTGAATCTTGGGCTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGAGCGATGGC 5655 Query 211082 CTT 211084 ||| Sbjct 5656 CTT 5658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159112999606490