Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 179 9e-40
seq1821 120 7e-22
seq635 120 7e-22
seq2084 107 4e-18
seq2007 104 5e-17
seq2167 87.8 4e-12
>seq1950
Length=170036
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| ||||||||||| || |||||||| ||||| | ||||| | |||||
Sbjct 63463 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCC 63404
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| | ||| || ||||| || |||| || |||||||||
Sbjct 63403 TCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCC 63344
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || || |||||||| || ||||||||||| ||||| |||
Sbjct 63343 TGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTC 63284
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| ||||| ||||| | |||||
Sbjct 63283 TTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252
Score = 154 bits (170), Expect = 3e-32
Identities = 147/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| ||||||||||| || || || || ||||| | ||| || | || ||
Sbjct 63235 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGAGTGCGGCCGTCC 63176
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| ||||| || || || || || || ||||||| ||| |||||||||
Sbjct 63175 TCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCC 63116
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || ||||| ||||| ||| ||||||||||| ||||| |||
Sbjct 63115 TGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 63056
Query 211083 TTTCCCGT 211090
|| || ||
Sbjct 63055 TTGCCGGT 63048
Score = 122 bits (134), Expect = 2e-22
Identities = 158/217 (73%), Gaps = 5/217 (2%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| |||||| ||| || |||||||| || || || |||| || ||
Sbjct 63696 AGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCGTCC 63637
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| ||||| || ||||| || || | || ||||||||
Sbjct 63636 TCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 63577
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA-GCTTTCA----ACCTCGAGAGTGA 211077
|| ||||| || || || ||||||||||| || | || || || || || ||||
Sbjct 63576 TGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACTTCACTTCAAGTGTGA 63517
Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| ||||| || ||||| ||||| || || | ||||||
Sbjct 63516 TAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
>seq1821
Length=46945
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| || || | | || | ||||| |||| |||||| || ||||||||
Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || || || || || || | ||| ||||||||||||||||| || || || |||
Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 19179
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || ||
Sbjct 19178 ATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 19120
>seq635
Length=74236
Score = 120 bits (132), Expect = 7e-22
Identities = 197/283 (70%), Gaps = 6/283 (2%)
Strand=Plus/Plus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144
|||| |||||| ||||||||||| | ||||| ||||| |||||| ||||| ||
Sbjct 35178 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAA---GCATCCTTGTACAGGATGAAAGGG 35234
Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204
|| ||| | |||||| | || ||| | ||||| || ||| || |||||||||
Sbjct 35235 CCGCCAGTCTCGGTCTGAGCCTCAAGGATGGCGTACCAAATCTTCTGTGCGCGGACAGTC 35294
Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264
| | | |||| |||||||||| | ||| |||| ||||| ||| || |||
Sbjct 35295 TCACGGCCACGGCCTTGCTTCTCGTACTGCTCGTAAAGCTTTTCGAACTCCTCGCCGTAG 35354
Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324
||||| ||||||| || |||||||||||| | ||| |||| | |||| ||||
Sbjct 35355 ACATCGGCGAGACCAGGGCACTCATTGGGGCACATGAGGGTCCATTCGCCGTTCTCCTCA 35414
Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
|| || |||||||| || || | | |||| | || ||||||
Sbjct 35415 ACACGCTTCATGAACAGATCTGGGATCCAAAGTGCGAAGAAAA 35457
>seq2084
Length=280932
Score = 107 bits (118), Expect = 4e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| || |||| ||||| | ||||||
Sbjct 181301 AGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCT 181242
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| ||||||||||| |||||||| | ||| || ||||| || || | ||| ||||||||
Sbjct 181241 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 181183
>seq2007
Length=19708
Score = 104 bits (114), Expect = 5e-17
Identities = 86/104 (83%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
||||| |||||||| ||||| | || ||||| ||||| ||||| ||| ||||||||||
Sbjct 5914 CCTTC-TTGTCCTGAATCTTGGGCTTGACGTTGTCGATAGTGTCGGAGGATTCAACCTCG 5972
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||| |||||||| ||||||||||| || || | ||| ||
Sbjct 5973 AGAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGTAT 6016
>seq2167
Length=8863
Score = 87.8 bits (96), Expect = 4e-12
Identities = 94/123 (76%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT-TCCTTGTC 211021
|| |||||||||| |||||||| | ||| || ||||| | |||| ||| |||||||
Sbjct 5536 TCAAGCTGCTTGCTAGCGAAGATCAAGCGCTGCTGGTCTGATGGAATACCTCTCCTTGTT 5595
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
||| ||||| | || ||||| ||||| ||||| || ||||||||||||| ||| |
Sbjct 5596 CTGAATCTTGGGCTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGAGCGATGGC 5655
Query 211082 CTT 211084
|||
Sbjct 5656 CTT 5658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159112999606490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |