Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1950 143 6e-29 seq1821 116 9e-21 seq1966 105 2e-17 seq2198 98.7 2e-15 >seq1950 Length=170036 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| |||||||| || || |||| |||||||||| || || | ||||| Sbjct 63463 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCC 63404 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||||||||| | || || |||||||| |||||||| |||||||| Sbjct 63403 TCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCC 63344 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || ||||||||||| | || || || | ||||| ||| Sbjct 63343 TGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTC 63284 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | || | |||||| Sbjct 63283 TTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||||||||| || || || | ||||||||| | | ||| | || || Sbjct 63235 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGAGTGCGGCCGTCC 63176 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || || || || || || ||||| || |||||||| Sbjct 63175 TCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCC 63116 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||| ||||| |||| || || || | ||||| ||| Sbjct 63115 TGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 63056 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 63055 TTGCCGGTCA 63046 Score = 113 bits (124), Expect = 1e-19 Identities = 155/217 (71%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||| || || |||| ||||| ||| || || | || || Sbjct 63696 AGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCGTCC 63637 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || ||||||||| Sbjct 63636 TCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 63577 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTC-----CACGTCTAACGTGA 225676 || ||||| ||| ||| |||||||||||||| | ||| ||| || | |||| Sbjct 63576 TGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACTTCACTTCAAGTGTGA 63517 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||||||| || | || || | ||| | ||||| Sbjct 63516 TAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480 >seq1821 Length=46945 Score = 116 bits (128), Expect = 9e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | |||||| | ||||| || | |||||| ||||||||||| Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || || || || || || || |||||||| |||||||| ||| ||| ||| Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 19179 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| |||| || || || | ||||| ||||||||||| Sbjct 19178 ATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 19135 >seq1966 Length=36277 Score = 105 bits (116), Expect = 2e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | ||||| ||| ||||| || || || | | |||||||||||| | |||||| Sbjct 15019 CAATTATACAATAGTATAATTACAGCACACGCAATATTAATGATTTTCTTTATGGTTATG 14960 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | |||||||| ||||| || |||| || | |||||| | |||||| || ||| Sbjct 14959 CCAGCAATGATAGGAGGTTTTGGTAATTTCTTACTACCTTTATTAGTTGGTGGGCCAGAT 14900 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||||| || || || | || || |||||||| |||||| |||| ||| Sbjct 14899 ATGGCATTCCCTAGATTAAATAACATAAGTTTCTGATTATTACCTCCT 14852 >seq2198 Length=12806 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 ||||||||| || ||| || || || || || || ||||||| |||||| | ||||| Sbjct 6109 CCAACTTTATAATAGTATAATCACTGCACACGCTATTCTTATGATCTTCTTTATGGTTAT 6168 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| | | ||||| || || || || | || | |||||| | | || | |||||| Sbjct 6169 GCCCGCATTAATAGGAGGATTTGGTAACTTTTTATTACCTTTATTACTAGGAGGTCCTGA 6228 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACT 7712 |||||| ||||| || | || |||||||||| ||||||||| Sbjct 6229 TATGGCATTTCCCAGATTAAATAATATAAGTTATTGATTACT 6270 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || || |||||||||||||| |||||||| | || || || ||||| || | Sbjct 6682 TTCAGGGTGTCCGAAAAATCAGAATAAGTGTTGATACAATATGGGGTCCCCTCCTCCAGC 6623 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | ||||| ||| |||||||| |||||||||||||| || Sbjct 6622 TACTTCAAAGAAGGATGTATTAAAGTTTCTATCAGTTAATAC 6581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192491076542444