Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 143 6e-29
seq1821 116 9e-21
seq1966 105 2e-17
seq2198 98.7 2e-15
>seq1950
Length=170036
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| |||||||| || || |||| |||||||||| || || | |||||
Sbjct 63463 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTACGGCCATCC 63404
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||||||||| | || || |||||||| |||||||| ||||||||
Sbjct 63403 TCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGGAATACCCTCCTTGTCC 63344
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| || ||||||||||| | || || || | ||||| |||
Sbjct 63343 TGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAACCTCGAGGGTGATGGTC 63284
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | || | ||||||
Sbjct 63283 TTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252
Score = 136 bits (150), Expect = 9e-27
Identities = 144/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||||||||||||||| || || || | ||||||||| | | ||| | || ||
Sbjct 63235 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGAGTGCGGCCGTCC 63176
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || ||||| || || || || || || || ||||| || ||||||||
Sbjct 63175 TCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCC 63116
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||| ||||| |||| || || || | ||||| |||
Sbjct 63115 TGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 63056
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 63055 TTGCCGGTCA 63046
Score = 113 bits (124), Expect = 1e-19
Identities = 155/217 (71%), Gaps = 5/217 (2%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| |||||| || || |||| ||||| ||| || || | || ||
Sbjct 63696 AGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCGTCC 63637
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || ||||| || || || || |||||||||
Sbjct 63636 TCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 63577
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTC-----CACGTCTAACGTGA 225676
|| ||||| ||| ||| |||||||||||||| | ||| ||| || | ||||
Sbjct 63576 TGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACTTCACTTCAAGTGTGA 63517
Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| |||||||| || | || || | ||| | |||||
Sbjct 63516 TAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
>seq1821
Length=46945
Score = 116 bits (128), Expect = 9e-21
Identities = 124/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| ||||| || | |||||| | ||||| || | |||||| |||||||||||
Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || || || || || || || |||||||| |||||||| ||| ||| |||
Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 19179
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| |||| || || || | ||||| |||||||||||
Sbjct 19178 ATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 19135
>seq1966
Length=36277
Score = 105 bits (116), Expect = 2e-17
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| | ||||| ||| ||||| || || || | | |||||||||||| | ||||||
Sbjct 15019 CAATTATACAATAGTATAATTACAGCACACGCAATATTAATGATTTTCTTTATGGTTATG 14960
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| | |||||||| ||||| || |||| || | |||||| | |||||| || |||
Sbjct 14959 CCAGCAATGATAGGAGGTTTTGGTAATTTCTTACTACCTTTATTAGTTGGTGGGCCAGAT 14900
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
||||| || || || | || || |||||||| |||||| |||| |||
Sbjct 14899 ATGGCATTCCCTAGATTAAATAACATAAGTTTCTGATTATTACCTCCT 14852
>seq2198
Length=12806
Score = 98.7 bits (108), Expect = 2e-15
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
||||||||| || ||| || || || || || || ||||||| |||||| | |||||
Sbjct 6109 CCAACTTTATAATAGTATAATCACTGCACACGCTATTCTTATGATCTTCTTTATGGTTAT 6168
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
||| | | ||||| || || || || | || | |||||| | | || | ||||||
Sbjct 6169 GCCCGCATTAATAGGAGGATTTGGTAACTTTTTATTACCTTTATTACTAGGAGGTCCTGA 6228
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACT 7712
|||||| ||||| || | || |||||||||| |||||||||
Sbjct 6229 TATGGCATTTCCCAGATTAAATAATATAAGTTATTGATTACT 6270
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| || || |||||||||||||| |||||||| | || || || ||||| || |
Sbjct 6682 TTCAGGGTGTCCGAAAAATCAGAATAAGTGTTGATACAATATGGGGTCCCCTCCTCCAGC 6623
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773
| ||||| ||| |||||||| |||||||||||||| ||
Sbjct 6622 TACTTCAAAGAAGGATGTATTAAAGTTTCTATCAGTTAATAC 6581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192491076542444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |