Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1950 150 4e-31 seq1821 129 1e-24 seq2084 105 1e-17 seq2106 93.3 9e-14 seq2007 89.7 1e-12 seq1917 87.8 4e-12 >seq1950 Length=170036 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| || || ||||||||||| || | Sbjct 63479 ACCACCACGGAGACGAAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 63420 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| ||||| || || || |||||||| || || ||||| || Sbjct 63419 CAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGG 63360 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || || | || || ||||| |||| || || Sbjct 63359 AATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAAC 63300 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| || || || ||||| Sbjct 63299 CTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252 Score = 141 bits (156), Expect = 2e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || || || ||||| |||| Sbjct 63251 ACCACCACGCAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGA 63192 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| ||||| || ||||| || || | ||| || || || || Sbjct 63191 AAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGG 63132 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| ||||||||||| |||||||| ||| || || | ||||||||||| || | || | Sbjct 63131 AATTCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATAGTGTCGGAGGACTCAA 63073 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077 | ||||| ||||| ||||| || |||| Sbjct 63072 CCTCGAGGGTGATGGTCTTGCCGGTCA 63046 Score = 140 bits (154), Expect = 7e-28 Identities = 170/232 (73%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||| || | ||||| || || |||||||||||||| Sbjct 63711 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 63652 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || || ||||| | || || ||||| || Sbjct 63651 AGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGG 63592 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC---- 283048 || |||||||||||||| ||||| | || || | ||||| ||||| || | ||| Sbjct 63591 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACT 63532 Query 283049 -GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 63531 TCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480 >seq1821 Length=46945 Score = 129 bits (142), Expect = 1e-24 Identities = 138/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||||| | |||||||||||||| | || || || || |||||| Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030 | ||| || || || || || ||||||||||| |||||| ||||| || || | || Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTC 19180 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| ||||| || | ||||| || || ||||| ||||| ||||| | ||||| ||||| Sbjct 19179 GATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 19120 >seq2084 Length=280932 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | || || || |||||||||||||| | Sbjct 181317 ACCACCACGCAGGCGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 181258 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || || || || ||||| |||||||| || || ||||| || Sbjct 181257 GAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGG 181198 Query 282992 AATACCCTCCTTGTCT 283007 || |||||||||||| Sbjct 181197 GATTCCCTCCTTGTCT 181182 >seq2106 Length=142898 Score = 93.3 bits (102), Expect = 9e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 ||||||||||||| | |||||| | || || ||||| || || || || ||| | || Sbjct 23879 TCGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCAGACCGTCTGTTGT 23938 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 |||| || || || |||| | || ||| ||| ||||| |||| || |||||| || Sbjct 23939 TGGCACTCGGCAACCAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATGGAGAACA 23998 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 |||| || || || || ||||| ||||| |||||||| | || || || | | | | Sbjct 23999 TTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGTGTTGGTGACTACCAGAAGGCTG 24058 Query 230407 GTGT 230410 |||| Sbjct 24059 GTGT 24062 >seq2007 Length=19708 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||| |||||| || ||||| | || ||| | ||||||||||| || | ||| || Sbjct 5910 ATGCCCTTCTTGTCCTGAATCTTGGGCTTGACGTTGTCGATAGTGTCGGAGGATTCAACC 5969 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | |||||| ||||| ||||| || Sbjct 5970 TCGAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGTAT 6016 >seq1917 Length=177239 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 |||| ||| || ||| ||| ||||||||||||| ||||||||| || ||| | ||||| Sbjct 31946 TTCTCGGTCGTCGCCGTTAGCGTAACGCCATTGGAGGTACTGATTTGGTGTCTTCTCAAG 32005 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 ||| ||| | ||| | || ||||||||| | ||| ||| ||||| || ||||| Sbjct 32006 ATGCATCTCAACGTGCTCGAGAGCGTGCTGCTTAATGTATCCAATACGCAAGTTAGGATG 32065 Query 316281 CTTCCAAACGCTACCG 316296 |||| ||| | |||| Sbjct 32066 CTTCTCAACACGACCG 32081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046703981805404