Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 150 4e-31
seq1821 129 1e-24
seq2084 105 1e-17
seq2106 93.3 9e-14
seq2007 89.7 1e-12
seq1917 87.8 4e-12
>seq1950
Length=170036
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| || || || | ||| || || ||||||||||| || |
Sbjct 63479 ACCACCACGGAGACGAAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 63420
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| ||||| || || || |||||||| || || ||||| ||
Sbjct 63419 CAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGTGG 63360
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| || ||||| | || || | || || ||||| |||| || ||
Sbjct 63359 AATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCTGAAGACTCAAC 63300
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| || || || |||||
Sbjct 63299 CTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCAT 63252
Score = 141 bits (156), Expect = 2e-28
Identities = 157/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || || || || | ||| || || || || ||||| ||||
Sbjct 63251 ACCACCACGCAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGA 63192
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||| ||||| ||||| || ||||| || || | ||| || || || ||
Sbjct 63191 AAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGG 63132
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| ||||||||||| |||||||| ||| || || | ||||||||||| || | || |
Sbjct 63131 AATTCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATAGTGTCGGAGGACTCAA 63073
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077
| ||||| ||||| ||||| || ||||
Sbjct 63072 CCTCGAGGGTGATGGTCTTGCCGGTCA 63046
Score = 140 bits (154), Expect = 7e-28
Identities = 170/232 (73%), Gaps = 5/232 (2%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| ||||| |||| || | ||||| || || ||||||||||||||
Sbjct 63711 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 63652
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || || || || ||||| | || || ||||| ||
Sbjct 63651 AGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGG 63592
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC---- 283048
|| |||||||||||||| ||||| | || || | ||||| ||||| || | |||
Sbjct 63591 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACT 63532
Query 283049 -GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 63531 TCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
>seq1821
Length=46945
Score = 129 bits (142), Expect = 1e-24
Identities = 138/180 (77%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
||||||||||||||||||| | |||||||||||||| | || || || || ||||||
Sbjct 19298 TTTTGGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAGATC 19239
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030
| ||| || || || || || ||||||||||| |||||| ||||| || || | ||
Sbjct 19238 AGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATC-TTGCTCTTGACATTGTC 19180
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||| ||||| || | ||||| || || ||||| ||||| ||||| | ||||| |||||
Sbjct 19179 GATTGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 19120
>seq2084
Length=280932
Score = 105 bits (116), Expect = 1e-17
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || ||||| || | || || || |||||||||||||| |
Sbjct 181317 ACCACCACGCAGGCGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 181258
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||||||||| || || || || ||||| |||||||| || || ||||| ||
Sbjct 181257 GAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGG 181198
Query 282992 AATACCCTCCTTGTCT 283007
|| ||||||||||||
Sbjct 181197 GATTCCCTCCTTGTCT 181182
>seq2106
Length=142898
Score = 93.3 bits (102), Expect = 9e-14
Identities = 131/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286
||||||||||||| | |||||| | || || ||||| || || || || ||| | ||
Sbjct 23879 TCGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCAGACCGTCTGTTGT 23938
Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346
|||| || || || |||| | || ||| ||| ||||| |||| || |||||| ||
Sbjct 23939 TGGCACTCGGCAACCAGAAGTTCTACAACGCCACCAACCCATTCGACTTCATGGAGAACA 23998
Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406
|||| || || || || ||||| ||||| |||||||| | || || || | | | |
Sbjct 23999 TTTCTCTTGGCGGCAAGACCAACTTTTTCGAGAAGCGTGTTGGTGACTACCAGAAGGCTG 24058
Query 230407 GTGT 230410
||||
Sbjct 24059 GTGT 24062
>seq2007
Length=19708
Score = 89.7 bits (98), Expect = 1e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||| |||||| || ||||| | || ||| | ||||||||||| || | ||| ||
Sbjct 5910 ATGCCCTTCTTGTCCTGAATCTTGGGCTTGACGTTGTCGATAGTGTCGGAGGATTCAACC 5969
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||||| ||||| || || | |||||| ||||| ||||| ||
Sbjct 5970 TCGAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGTAT 6016
>seq1917
Length=177239
Score = 87.8 bits (96), Expect = 4e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220
|||| ||| || ||| ||| ||||||||||||| ||||||||| || ||| | |||||
Sbjct 31946 TTCTCGGTCGTCGCCGTTAGCGTAACGCCATTGGAGGTACTGATTTGGTGTCTTCTCAAG 32005
Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280
||| ||| | ||| | || ||||||||| | ||| ||| ||||| || |||||
Sbjct 32006 ATGCATCTCAACGTGCTCGAGAGCGTGCTGCTTAATGTATCCAATACGCAAGTTAGGATG 32065
Query 316281 CTTCCAAACGCTACCG 316296
|||| ||| | ||||
Sbjct 32066 CTTCTCAACACGACCG 32081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046703981805404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |