Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1950 150 4e-31 seq2007 98.7 2e-15 seq2084 87.8 4e-12 >seq1950 Length=170036 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| ||||| || |||||||||||||| || |||||| Sbjct 63255 CAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCAGAC 63314 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || || || || |||||||| Sbjct 63315 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCCGACCAGCAG 63374 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || ||||| ||||| | || || ||||||| ||| || Sbjct 63375 CGCTTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGATTACAACATC 63434 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 63435 CAGAAGGAGTCCACTCTGCACCTTGT 63460 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||||||||| || ||| ||||| ||||| || || || Sbjct 63048 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTGAAGAGC 63107 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || ||||| |||||||| ||||| || || || |||||||| || Sbjct 63108 AAGATCCAGGACAAGGAGGGAATTCCTCCGGATCAGCAGCGTCTCATTTTCGCCGGCAAG 63167 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| || || | |||||| | ||||| || | || || || || || || || Sbjct 63168 CAACTCGAGGACGGCCGCACTCTTTCTGATTACAATATTCAGAAGGAGTCCACTCTCCAC 63227 Query 178125 CTTGT 178129 ||||| Sbjct 63228 CTTGT 63232 Score = 118 bits (130), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA----AAGC-T 177978 || || ||||| || || ||||| || || || ||||| || || ||| | || | | Sbjct 63483 CAGATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTGAAGTGGAATCAT 63542 Query 177979 CAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACC 178038 ||||||||||||| || ||||| |||||||| ||||| || || ||||| || |||| Sbjct 63543 CAGACACCATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCAGACC 63602 Query 178039 AGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATA 178098 |||| || || |||||||| || || |||||||| || || |||| || ||| || | Sbjct 63603 AGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGGACACTGAGCGACTACA 63662 Query 178099 ACGTCCAAAAAGA 178111 || |||| || || Sbjct 63663 ACATCCAGAAGGA 63675 >seq2007 Length=19708 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/101 (82%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| ||||| || ||||| |||||||| ||| ||| ||| Sbjct 6013 CAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACTCTCGAGGTTGAATCCTCCGAC 5954 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||| |||||||| | |||||||||||| ||||||| Sbjct 5953 ACTATCGACAACGTCAAGCCCAAGATTCAGGAC-AAGAAGG 5914 >seq2084 Length=280932 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || |||||||| ||||||||||| || | ||||||||||| || ||||||||| Sbjct 181183 GACAAGGAGGGAATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 181242 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | || || | || || ||| |||| || || || || || || || || Sbjct 181243 GATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGT 181298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203690699711444