Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 150 4e-31
seq2007 98.7 2e-15
seq2084 87.8 4e-12
>seq1950
Length=170036
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || ||||| ||||| || |||||||||||||| || ||||||
Sbjct 63255 CAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCAGAC 63314
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || || || || || ||||||||
Sbjct 63315 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCCGACCAGCAG 63374
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || || ||||| ||||| | || || ||||||| ||| ||
Sbjct 63375 CGCTTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGTACCCTGTCCGATTACAACATC 63434
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || ||||| |||||
Sbjct 63435 CAGAAGGAGTCCACTCTGCACCTTGT 63460
Score = 122 bits (134), Expect = 2e-22
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||||||||| || ||| ||||| ||||| || || ||
Sbjct 63048 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTGAAGAGC 63107
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || ||||| |||||||| ||||| || || || |||||||| ||
Sbjct 63108 AAGATCCAGGACAAGGAGGGAATTCCTCCGGATCAGCAGCGTCTCATTTTCGCCGGCAAG 63167
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||||| || || | |||||| | ||||| || | || || || || || || ||
Sbjct 63168 CAACTCGAGGACGGCCGCACTCTTTCTGATTACAATATTCAGAAGGAGTCCACTCTCCAC 63227
Query 178125 CTTGT 178129
|||||
Sbjct 63228 CTTGT 63232
Score = 118 bits (130), Expect = 3e-21
Identities = 143/193 (74%), Gaps = 5/193 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA----AAGC-T 177978
|| || ||||| || || ||||| || || || ||||| || || ||| | || | |
Sbjct 63483 CAGATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTGAAGTGGAATCAT 63542
Query 177979 CAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACC 178038
||||||||||||| || ||||| |||||||| ||||| || || ||||| || ||||
Sbjct 63543 CAGACACCATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCACCAGACC 63602
Query 178039 AGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATA 178098
|||| || || |||||||| || || |||||||| || || |||| || ||| || |
Sbjct 63603 AGCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGGACACTGAGCGACTACA 63662
Query 178099 ACGTCCAAAAAGA 178111
|| |||| || ||
Sbjct 63663 ACATCCAGAAGGA 63675
>seq2007
Length=19708
Score = 98.7 bits (108), Expect = 2e-15
Identities = 83/101 (82%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || |||||||| ||||| || ||||| |||||||| ||| ||| |||
Sbjct 6013 CAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACTCTCGAGGTTGAATCCTCCGAC 5954
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|| ||||| |||||||| | |||||||||||| |||||||
Sbjct 5953 ACTATCGACAACGTCAAGCCCAAGATTCAGGAC-AAGAAGG 5914
>seq2084
Length=280932
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| || |||||||| ||||||||||| || | ||||||||||| || |||||||||
Sbjct 181183 GACAAGGAGGGAATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAA 181242
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||||| | || || | || || ||| |||| || || || || || || || ||
Sbjct 181243 GATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGT 181298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203690699711444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |