Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03-
01] 2,626 sequences; 47,119,461 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1950 114 1e-20
seq2084 111 1e-19
seq491 98.7 9e-16
>seq1950
Length=170036
Score = 114 bits (126), Expect = 1e-20
Identities = 169/235 (72%), Gaps = 11/235 (5%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 63711 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 63652
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||| || ||||| || |||||||| ||||| | ||
Sbjct 63651 AGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGG 63592
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTC-----GCTCG 41807
| || |||||||| | ||| | || | ||| || | || | ||||| ||
Sbjct 63591 ATGCCCTCCTTGT-CTTGAATCTTCGACTTGACATTGTCG--ATGGTGTCTGATGATTCC 63535
Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| ||| || | || || || || || || || ||||| ||||| ||||||||
Sbjct 63534 ACTTCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480
Score = 104 bits (114), Expect = 2e-17
Identities = 148/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| |||||||||||| || || || ||
Sbjct 63250 CCACCACGCAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAA 63191
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||| |||||||||||||| || || ||||| || |||| |||
Sbjct 63190 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGA 63131
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || |||| || | | | ||||||| ||||| ||
Sbjct 63130 ATTCCCTCCTTGTCCTGGATCTTGCTCTTC-ACATTGTCGATAGTGTCGGAGGACTCAAC 63072
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
||| | || || || || || ||||
Sbjct 63071 CTCGAGGGTGATGGTCTTGCCGGTCA 63046
>seq2084
Length=280932
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || || ||||||||| ||||| ||||| |||
Sbjct 181316 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 181257
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||||||||| |||| |||||| ||||||| ||
Sbjct 181256 AGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 181197
Query 41756 ACGCTCTCCTTGTC 41769
| | |||||||||
Sbjct 181196 ATTCCCTCCTTGTC 181183
>seq491
Length=81577
Score = 98.7 bits (108), Expect = 9e-16
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719
|| || ||| ||| |||| |||| ||||||||||||||||| ||||| ||||| |||
Sbjct 41589 TGGAGAGTGGACTCTTTCTAGGTGTTGTAGTCGGAGAGGGTGCGGTCGTCCTCGAGTTGC 41530
Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|||| |||||| |||| |||||| | ||| || | |||||||||||| |||
Sbjct 41529 TTGCTGGCGAAGATCAAGCGCTGCTAGTCTAGTGGGATGCTCTCCTTGTCGATG 41476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462288824871200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |