Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20eumusae_20[genbank_20GCA_5F001578235.1_202016-03- 01] 2,626 sequences; 47,119,461 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1950 114 1e-20 seq2084 111 1e-19 seq491 98.7 9e-16 >seq1950 Length=170036 Score = 114 bits (126), Expect = 1e-20 Identities = 169/235 (72%), Gaps = 11/235 (5%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| |||||||||||||| ||||| |||||| Sbjct 63711 CCACCACGCAGACGAAGCACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 63652 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| || ||||| || |||||||| ||||| | || Sbjct 63651 AGTGTCCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGG 63592 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTC-----GCTCG 41807 | || |||||||| | ||| | || | ||| || | || | ||||| || Sbjct 63591 ATGCCCTCCTTGT-CTTGAATCTTCGACTTGACATTGTCG--ATGGTGTCTGATGATTCC 63535 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||| || | || || || || || || || ||||| ||||| |||||||| Sbjct 63534 ACTTCACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 63480 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| |||||||||||| || || || || Sbjct 63250 CCACCACGCAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAA 63191 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| |||||||||||||| || || ||||| || |||| ||| Sbjct 63190 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGACGCTGCTGATCCGGAGGA 63131 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||| || | | | ||||||| ||||| || Sbjct 63130 ATTCCCTCCTTGTCCTGGATCTTGCTCTTC-ACATTGTCGATAGTGTCGGAGGACTCAAC 63072 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||| | || || || || || |||| Sbjct 63071 CTCGAGGGTGATGGTCTTGCCGGTCA 63046 >seq2084 Length=280932 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| ||||| ||||| ||| Sbjct 181316 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 181257 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| |||| |||||| ||||||| || Sbjct 181256 AGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGG 181197 Query 41756 ACGCTCTCCTTGTC 41769 | | ||||||||| Sbjct 181196 ATTCCCTCCTTGTC 181183 >seq491 Length=81577 Score = 98.7 bits (108), Expect = 9e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 || || ||| ||| |||| |||| ||||||||||||||||| ||||| ||||| ||| Sbjct 41589 TGGAGAGTGGACTCTTTCTAGGTGTTGTAGTCGGAGAGGGTGCGGTCGTCCTCGAGTTGC 41530 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||| |||||| |||| |||||| | ||| || | |||||||||||| ||| Sbjct 41529 TTGCTGGCGAAGATCAAGCGCTGCTAGTCTAGTGGGATGCTCTCCTTGTCGATG 41476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462288824871200