Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1032 131 2e-25 >seq1032 Length=45607 Score = 131 bits (144), Expect = 2e-25 Identities = 553/857 (65%), Gaps = 20/857 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAG---TTAGTTTTGCCCTCTAGAGATATAT 16730 ||||||| || | |||||| || ||||| ||| || || ||||| | || || |||| Sbjct 28504 TTTGGTAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCACCCAGCGAGATAT 28563 Query 16731 TCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGC 16788 |||||||||| || || || || || || || | | || | | | || || | Sbjct 28564 TCTCCATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGG--TTGCCGAGCGCCAG 28621 Query 16789 GATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAA-TTCGCAGTTCATTCCTA 16847 || | | || || |||||||| || || |||||||| | || || |||||| || | Sbjct 28622 GAGCAGACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGC-GTTCATGCCGA 28680 Query 16848 TAAGA-CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTA 16906 || || | ||| | || || |||| || ||||| || |||| || || Sbjct 28681 GGAGTGCGCAGGGGAGG-GCGTCTGTCAGGAACTCCTGCTCGATCGCAACGGCCTCGACG 28739 Query 16907 ATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACAT 16966 || || || || ||| || || | | || || || |||| ||| || Sbjct 28740 ATGATGCTCTGTACGACAGCCTTTGAGGGCTTGTTCTTCAGGTGAGAGAACAGCAGGCAC 28799 Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026 ||||| ||| || | || ||||| | ||| || ||||| || || || | || Sbjct 28800 GCGAAGTCGGTGTGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACCA 28859 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 ||||| || || ||||| | ||| || || | || || || || || ||||| ||| Sbjct 28860 GGCATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAGATA 28919 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146 || || || | || || || || | ||| |||| | |||| | |||| | ||| Sbjct 28920 CCTTCAACTGCAGCGAAGGCAATCAGTCGCATGGCGAAGGTCGAGCTCTTGTCGCTGATC 28979 Query 17147 CATTTCTGCACCCACTCGGCTTTT-TGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 ||| | |||| || || ||| ||| |||||| || | || ||||| || || Sbjct 28980 CATCGGAGTGCCCAGTCCGCCTTTCTGCGG-ATGCAAGGGATATTGTCGATGGCGTTGAA 29038 Query 17206 TAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 | | | || | | | || ||| | || || || |||||||| ||| ||| | | Sbjct 29039 CAGGTA-TGTTCGTTGTTTGGGCTCGCTAATGTATGTGTCGATGAGGAGGGAGTATGTCT 29097 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 | ||||| ||||||||||| ||||| ||||| || |||||||| ||||| | || | Sbjct 29098 CCGAGTGGATGTTCTCCATCATGATCTGGAATCCATAGAAGCATCGTGCTTCGGGTACTG 29157 Query 17325 GAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 ||||| || ||| |||||| | || || ||||| |||||||| || ||||||| Sbjct 29158 TCACTTCGGCGCTGAAGCGTTCCACCAGGTTCTCGTTGACGATGCCATCTGATGCGGCGA 29217 Query 17385 AAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAAC--GCGCCAG 17440 | || || | | ||| ||||| | ||||| ||||| | | | | |||| Sbjct 29218 AGAATGCAAGAACATGTGAGATGAAGAAACGCTCGTCGTCGGTG-AGGCGCTTGTTCCAG 29276 Query 17441 TCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTT 17500 || | | ||| || |||| ||| | || |||| ||||| || || | ||||| Sbjct 29277 TCATGCAGATCCTTTGATAGATCAATCTCCTCGGCAGTCCAGAATGATGCTTCGGCCTTC 29336 Query 17501 TTATACATATTCCAAAT 17517 || ||||| ||||| || Sbjct 29337 TTGTACATGTTCCATAT 29353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532486688360