Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1032 264 1e-65 seq1917 98.7 1e-15 seq1019 86.0 6e-12 >seq1032 Length=45607 Score = 264 bits (292), Expect = 1e-65 Identities = 546/794 (69%), Gaps = 19/794 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| ||||||||| |||||||| || || |||||||| | ||||||| | || || Sbjct 29353 ATATGGAACATGTACAAGAAGGCCGAAGCATCATTCTGGACTGCCGAGGAGATTGATCTA 29294 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| | |||||| | |||| | | |||| ||||||| |||||| Sbjct 29293 TCAAAGGATCTGCATGACTGGAACAAGCGCCTCACCGACGACGAGCGTTTCTTCATCTCA 29234 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || || || || |||||||| || ||||||||||||||||| ||||| || || Sbjct 29233 CATGTTCTTGCATTCTTCGCCGCATCAGATGGCATCGTCAACGAGAACCTGGTGGAACGC 29174 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | | || ||| | |||| || || |||||||| || || |||||| || Sbjct 29173 TTCAGCGCCGAAGTGACAG-TACCCGAAGCACGATGCTTCTATGGATTCCAGATCATGAT 29115 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||||||| | |||||||| | || || |||||||||||| ||| | || | | Sbjct 29114 GGAGAACATCCACTCGGAGACATACTCCCTCCTCATCGACACATACATTAGCGAGCCCAA 29055 Query 116932 GGA--GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGT-CAAAGAGAAGGC 116988 | ||| | | |||| ||||||||||| | || || ||| | | ||| ||||| Sbjct 29054 ACAACGAACATAC--CTGTTCAACGCCATCGACAATATCCCTTGCATCCGCAGA-AAGGC 28998 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGG 117047 || ||||| || || |||||| || || |||| || |||||| | ||| ||| | | Sbjct 28997 GGACTGGGCACTCCGATGGATCAGCGACA-AGAGCTCGACCTTCGCCATGCGACTGATTG 28939 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| || || || || ||||||| || || || || |||| || ||||| | Sbjct 28938 CCTTCGCTGCAGTTGAAGGTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCTGGCTGA 28879 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || |||||||| || || || ||| ||||||||||||||| | ||||| | Sbjct 28878 AGAAGCGTGGTCTCATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAAG 28819 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 | |||| |||||| || || |||||||| || || | | || || Sbjct 28818 GCATGCACACCGACTTCGCGTGCCTGCTGTTCTCTCACCTGAAGAACAAGCCCTCAAAGG 28759 Query 117228 CGCGCGT-CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | ||| ||| | ||| || ||| || || || ||||||||| ||||| || || Sbjct 28758 CTGTCGTACAGAG-CATCATCGTCGAGGCCGTTGCGATCGAGCAGGAGTTCCTGACAGAC 28700 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGT 117344 || || || |||| || || || | || || || | |||| || ||||| || | Sbjct 28699 GCCCT-CCCCTGCGCACTCCTCGGCATGAA-CGCTAAGCTCATGTGCCAGTACATTGAAT 28642 Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404 | || |||||| | ||||| || | ||| | | | ||| ||||||| | |||||| Sbjct 28641 TTGTGGCCGACCGTCTGCTCCTGGCGCTCGGCAACCAGAAGTTCTACAACGCCACCAACC 28582 Query 117405 CGCTGGACTTTATG 117418 || | ||||| ||| Sbjct 28581 CGTTCGACTTCATG 28568 >seq1917 Length=9250 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 40698 ATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT 40757 |||||| || || ||||| || || || || || | || || ||| || | |||| | Sbjct 9166 ATTCGTCAAGACACTCACAGGAAAGACGATTACGCTAGAAGTGGAATCCTCAGACACGAT 9107 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | | | ||| || |||| ||||| ||||| ||||| |||||||||| || || Sbjct 9106 CGACAATGTGAAGAGCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCT 9047 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || | ||| ||||| ||| |||| || | || || | ||||||||||| ||||| Sbjct 9046 GATTTTCGCAGGCAAGCAGTTGGAAGATGGTCGTACTTTGTCAGACTACAACATTCAGAA 8987 Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| ||| ||||| | |||||||| ||| | || || Sbjct 8986 GGAGAGCACTCTGCACTTGGTGTTGCGTTTGCGTGGTGG 8948 >seq1019 Length=44428 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 |||||||| || |||||||||| || | |||| || ||||| ||||| || |||| Sbjct 44322 GAGGGCATTCCTCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGT 44381 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||||| ||| ||||||||||| ||||||||| |||| || || || Sbjct 44382 CGCACGCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTCCACCT 44428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206145633520