Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017-
04-24] 2,027 sequences; 27,920,864 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1032 264 1e-65
seq1917 98.7 1e-15
seq1019 86.0 6e-12
>seq1032
Length=45607
Score = 264 bits (292), Expect = 1e-65
Identities = 546/794 (69%), Gaps = 19/794 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| ||| ||||||||| |||||||| || || |||||||| | ||||||| | || ||
Sbjct 29353 ATATGGAACATGTACAAGAAGGCCGAAGCATCATTCTGGACTGCCGAGGAGATTGATCTA 29294
Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|| ||||| | |||||| | |||| | | |||| ||||||| ||||||
Sbjct 29293 TCAAAGGATCTGCATGACTGGAACAAGCGCCTCACCGACGACGAGCGTTTCTTCATCTCA 29234
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
|| || || || || |||||||| || ||||||||||||||||| ||||| || ||
Sbjct 29233 CATGTTCTTGCATTCTTCGCCGCATCAGATGGCATCGTCAACGAGAACCTGGTGGAACGC 29174
Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| || | | || ||| | |||| || || |||||||| || || |||||| ||
Sbjct 29173 TTCAGCGCCGAAGTGACAG-TACCCGAAGCACGATGCTTCTATGGATTCCAGATCATGAT 29115
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931
||||||| | |||||||| | || || |||||||||||| ||| | || | |
Sbjct 29114 GGAGAACATCCACTCGGAGACATACTCCCTCCTCATCGACACATACATTAGCGAGCCCAA 29055
Query 116932 GGA--GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGT-CAAAGAGAAGGC 116988
| ||| | | |||| ||||||||||| | || || ||| | | ||| |||||
Sbjct 29054 ACAACGAACATAC--CTGTTCAACGCCATCGACAATATCCCTTGCATCCGCAGA-AAGGC 28998
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGG 117047
|| ||||| || || |||||| || || |||| || |||||| | ||| ||| | |
Sbjct 28997 GGACTGGGCACTCCGATGGATCAGCGACA-AGAGCTCGACCTTCGCCATGCGACTGATTG 28939
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
||||||| || || || || ||||||| || || || || |||| || ||||| |
Sbjct 28938 CCTTCGCTGCAGTTGAAGGTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCTGGCTGA 28879
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| || || |||||||| || || || ||| ||||||||||||||| | ||||| |
Sbjct 28878 AGAAGCGTGGTCTCATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAAG 28819
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
| |||| |||||| || || |||||||| || || | | || ||
Sbjct 28818 GCATGCACACCGACTTCGCGTGCCTGCTGTTCTCTCACCTGAAGAACAAGCCCTCAAAGG 28759
Query 117228 CGCGCGT-CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286
| ||| ||| | ||| || ||| || || || ||||||||| ||||| || ||
Sbjct 28758 CTGTCGTACAGAG-CATCATCGTCGAGGCCGTTGCGATCGAGCAGGAGTTCCTGACAGAC 28700
Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGT 117344
|| || || |||| || || || | || || || | |||| || ||||| || |
Sbjct 28699 GCCCT-CCCCTGCGCACTCCTCGGCATGAA-CGCTAAGCTCATGTGCCAGTACATTGAAT 28642
Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404
| || |||||| | ||||| || | ||| | | | ||| ||||||| | ||||||
Sbjct 28641 TTGTGGCCGACCGTCTGCTCCTGGCGCTCGGCAACCAGAAGTTCTACAACGCCACCAACC 28582
Query 117405 CGCTGGACTTTATG 117418
|| | ||||| |||
Sbjct 28581 CGTTCGACTTCATG 28568
>seq1917
Length=9250
Score = 98.7 bits (108), Expect = 1e-15
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 40698 ATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT 40757
|||||| || || ||||| || || || || || | || || ||| || | |||| |
Sbjct 9166 ATTCGTCAAGACACTCACAGGAAAGACGATTACGCTAGAAGTGGAATCCTCAGACACGAT 9107
Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| | | ||| || |||| ||||| ||||| ||||| |||||||||| || ||
Sbjct 9106 CGACAATGTGAAGAGCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCT 9047
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|| | ||| ||||| ||| |||| || | || || | ||||||||||| |||||
Sbjct 9046 GATTTTCGCAGGCAAGCAGTTGGAAGATGGTCGTACTTTGTCAGACTACAACATTCAGAA 8987
Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||| ||| ||||| | |||||||| ||| | || ||
Sbjct 8986 GGAGAGCACTCTGCACTTGGTGTTGCGTTTGCGTGGTGG 8948
>seq1019
Length=44428
Score = 86.0 bits (94), Expect = 6e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848
|||||||| || |||||||||| || | |||| || ||||| ||||| || ||||
Sbjct 44322 GAGGGCATTCCTCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGT 44381
Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895
||||| ||| ||||||||||| ||||||||| |||| || || ||
Sbjct 44382 CGCACGCTCTCTGACTACAACATTCAGAAGGAGTCCACTCTCCACCT 44428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515206145633520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |