Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1032 89.7 5e-13 >seq1032 Length=45607 Score = 89.7 bits (98), Expect = 5e-13 Identities = 352/549 (64%), Gaps = 5/549 (1%) Strand=Plus/Plus Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 |||| |||||||| | || | |||||| || || || ||||| ||||| || || Sbjct 28812 TGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACCAGGCATGAGACCA 28871 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 || || || | ||| || || | ||||| || || || ||||| |||||||||||||| Sbjct 28872 CGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAGATACCTTCAACTGCA 28931 Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct-atccattttttagc 16428 || || |||| || |||| || | | || | | | | || |||||| || Sbjct 28932 GCGAAGGCAATCAGTCGCATGGCG-AAGGTCGAGCTCTTGTCGCTGATCCATCGGAGTGC 28990 Query 16429 ccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAttttt 16488 ||| | || ||| | || || || || || || || || | || || Sbjct 28991 CCAGTCCGCCTTTCTGCGGATGCAAGGGATATTGTCGATGGCGTTGAACAGGTATGTTCG 29050 Query 16489 ttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATT 16548 || |||| || ||| || || || || || | || | || || || || || Sbjct 29051 TTGTTTGGGCTCGCTAATGTATGTGTCGATGAGGAGGGAGTATGTCTCCGAGTGGATGTT 29110 Query 16549 CTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTA 16608 |||||| ||||| || ||||| ||||||| ||||||| || | ||||| | | Sbjct 29111 CTCCATCATGATCTGGAATCCATAGAAGCATCGTGCTTCGGGTACTGTCACTTCGGCGCT 29170 Query 16609 AAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTAT 16668 || | ||| | | ||| ||||| || || ||||| || || || || ||||| | Sbjct 29171 GAAGCGTTCCACCAGGTTCTCGTTGACGATGCCATCTGATGCGGCGAAGAATGCAAGAAC 29230 Query 16669 GTGTTTAATAAAAtttttttCGTTATC--TGA-AAGTTTTAACCAGTCAGAAAAATCTTT 16725 ||| || || |||| || ||| | || ||||||| | ||| || Sbjct 29231 ATGTGAGATGAAGAAACGCTCGTCGTCGGTGAGGCGCTTGTTCCAGTCATGCAGATCCTT 29290 Query 16726 TGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCA 16785 ||||| ||| | ||| || ||||||| || || || | ||||| || ||||| ||||| Sbjct 29291 TGATAGATCAATCTCCTCGGCAGTCCAGAATGATGCTTCGGCCTTCTTGTACATGTTCCA 29350 Query 16786 TATGTCTTC 16794 ||| | ||| Sbjct 29351 TATCTGTTC 29359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500281102200