Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017-
04-24] 2,027 sequences; 27,920,864 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1032 89.7 5e-13
>seq1032
Length=45607
Score = 89.7 bits (98), Expect = 5e-13
Identities = 352/549 (64%), Gaps = 5/549 (1%)
Strand=Plus/Plus
Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309
|||| |||||||| | || | |||||| || || || ||||| ||||| || ||
Sbjct 28812 TGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACCAGGCATGAGACCA 28871
Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369
|| || || | ||| || || | ||||| || || || ||||| ||||||||||||||
Sbjct 28872 CGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAGATACCTTCAACTGCA 28931
Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct-atccattttttagc 16428
|| || |||| || |||| || | | || | | | | || |||||| ||
Sbjct 28932 GCGAAGGCAATCAGTCGCATGGCG-AAGGTCGAGCTCTTGTCGCTGATCCATCGGAGTGC 28990
Query 16429 ccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAttttt 16488
||| | || ||| | || || || || || || || || | || ||
Sbjct 28991 CCAGTCCGCCTTTCTGCGGATGCAAGGGATATTGTCGATGGCGTTGAACAGGTATGTTCG 29050
Query 16489 ttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATT 16548
|| |||| || ||| || || || || || | || | || || || || ||
Sbjct 29051 TTGTTTGGGCTCGCTAATGTATGTGTCGATGAGGAGGGAGTATGTCTCCGAGTGGATGTT 29110
Query 16549 CTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTA 16608
|||||| ||||| || ||||| ||||||| ||||||| || | ||||| | |
Sbjct 29111 CTCCATCATGATCTGGAATCCATAGAAGCATCGTGCTTCGGGTACTGTCACTTCGGCGCT 29170
Query 16609 AAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTAT 16668
|| | ||| | | ||| ||||| || || ||||| || || || || ||||| |
Sbjct 29171 GAAGCGTTCCACCAGGTTCTCGTTGACGATGCCATCTGATGCGGCGAAGAATGCAAGAAC 29230
Query 16669 GTGTTTAATAAAAtttttttCGTTATC--TGA-AAGTTTTAACCAGTCAGAAAAATCTTT 16725
||| || || |||| || ||| | || ||||||| | ||| ||
Sbjct 29231 ATGTGAGATGAAGAAACGCTCGTCGTCGGTGAGGCGCTTGTTCCAGTCATGCAGATCCTT 29290
Query 16726 TGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCA 16785
||||| ||| | ||| || ||||||| || || || | ||||| || ||||| |||||
Sbjct 29291 TGATAGATCAATCTCCTCGGCAGTCCAGAATGATGCTTCGGCCTTCTTGTACATGTTCCA 29350
Query 16786 TATGTCTTC 16794
||| | |||
Sbjct 29351 TATCTGTTC 29359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462500281102200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |