Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1032 116 7e-21 seq721 96.9 7e-15 seq1111 89.7 1e-12 >seq1032 Length=45607 Score = 116 bits (128), Expect = 7e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 ||||||| |||||||||||||| |||||||| || | || |||||||| |||||| Sbjct 28941 TTGCCTTCGCTGCAGTTGAAGGTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCTGGC 28882 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| | ||||||||||||| | |||||| ||| |||| || | |||| Sbjct 28881 TGAAGAAGCGTGGTCTCATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACG 28822 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 |||| | || |||||| || ||| ||||||| Sbjct 28821 AAGGCATGCACACCGACTTCGCGTGCCTGCTGTT 28788 >seq721 Length=104476 Score = 96.9 bits (106), Expect = 7e-15 Identities = 183/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 ||| ||| || |||| || |||||| |||| ||||| || || || || ||| Sbjct 60026 TGACAGTTGAGACCGATACCACCAGCATTCTTTGAGATCATAGCGCAAATTTTCAGTGTA 59967 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACG-AGGAAAGTTG 94892 || ||||| ||||||||||| || |||| | | | | |||||||| | || || | | Sbjct 59966 TCGTAAATTCCCTCAATGCTGTCGTCTTTCATGTCGATGAGGAAGCAAGAAGCCAACTGG 59907 Query 94893 GGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 || | | || ||| | |||||||| || || || || || || || | |||| Sbjct 59906 CCGTTCGGC-GTACCAGCGCTGAACAGTGTTGGTGATGCGTGTGTGAAGTACTTATTCGA 59848 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012 |||| | ||||| || ||| | | | ||| || ||||||||| ||||| || || Sbjct 59847 CATGTAGTTGTATGTCTCGATGGCGGCCTCGATATCGTCTCCGTGAATTCCGACTGCTAC 59788 Query 95013 ACGCATAATCATGTCCTGAGGGCGCTC 95039 |||||| ||||||| ||| || | ||| Sbjct 59787 ACGCATGATCATGTGCTGCGGTCTCTC 59761 >seq1111 Length=185172 Score = 89.7 bits (98), Expect = 1e-12 Identities = 193/288 (67%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 35317 CAAGA--AGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGA 35374 ||||| |||| | ||||||||| ||| ||||| || || |||| ||||||| Sbjct 16895 CAAGATCAGAATGTGCACATCTGGGACGGAAATGGATCCCGCGAATACCTGGACAGCGTT 16836 Query 35375 GGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCAT 35434 || | | | | | || ||||| | || || || ||||| || || ||| | || Sbjct 16835 GGCCTCTCACACCGTGAAGTAGGAGACCTTGGGCCAGTGTACGGCTTTCAGTGGAGACAC 16776 Query 35435 TTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG 35494 ||||| || |||||| | ||| | | || || ||||| |||| | |||||| || Sbjct 16775 TTTGGAGCAGAATATAAGGACTGCCATACGGACTACACTGGGCAGGGCGTAGATCAACTG 16716 Query 35495 GCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCA 35554 ||| | | | | | |||| | |||||| |||| || ||||| || ||| | ||| Sbjct 16715 GCCGAAGTCATTCATAAGCTGAAAACAAATCCTTATGACAGGAGGATCATCATGTCCGCA 16656 Query 35555 TGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATG 35602 ||||||||| || | | |||||||| || |||||||||||| Sbjct 16655 TGGAATCCTGCAGACATGAAGAAGATGGCTCTACCGCCATGCCACATG 16608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989558299575785