Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1032 104 2e-17 >seq1032 Length=45607 Score = 104 bits (114), Expect = 2e-17 Identities = 355/543 (65%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| | |||||| | || || | |||| ||||| || |||||| | ||||| Sbjct 29037 TCAACGCCATCGACAATATCCCTTGCATCCGCAGAAAGGCGGACTGGGCACTCCGATGGA 28978 Query 52592 TCGAAAACGACAA-AGCC--ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAG 52648 || | |||||| ||| || || ||| || ||| | || || ||| ||| |||| Sbjct 28977 TC---AGCGACAAGAGCTCGACCTTCGCCATGCGACTGATTGCCTTCGCTGCAGTTGAAG 28921 Query 52649 GTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATG 52707 || | || || || || ||||| | || || | | || || | ||| | | ||| Sbjct 28920 GTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGTC-TCATG 28862 Query 52708 CCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTT 52767 || || |||||||| ||||||| | || |||||||||||||| |||||||| || || Sbjct 28861 CCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAAGGCATGCACACCGACTTC 28802 Query 52768 GCGTGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGA 52826 ||||| || | || | | | | | || | || ||| | | | | ||| Sbjct 28801 GCGTGCCTGCTGTTCT----CTCACCTGAAGAACAAGCCCTCAAAGGCTGTCGTAC-AGA 28747 Query 52827 -CATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTAT 52885 ||| | |||||||| | || || | ||||| | || ||||| | ||| Sbjct 28746 GCATCATCGTCGAGGCCGTTGCGATCGAGCAGGAGTTCCTGACAGACGCCCTCCCCTGCG 28687 Query 52886 CATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGAC 52945 || | | ||||||||||| | | |||||| ||||||| || ||||| || ||| | | Sbjct 28686 CACTCCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAATTTGTGGCCGACCGTC 28627 Query 52946 TGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGA 53005 || | || |||||| | | ||| | ||| || || ||||| || || ||| Sbjct 28626 TGCTCCTGGCGCTCGGCAACCAGAAGTTCTACAACGCCACCAACCCGTTCGACTTCATGG 28567 Query 53006 ACAACATATCGCTCGAGGGCAAAACAAA---CTTTTTCGAGAGACGTGTGGGCGAGTACA 53062 | || || ||||| | ||||| || || ||| ||||||| || || || || ||| Sbjct 28566 AGAATATCTCGCTGGGTGGCAAGACCAACTTCTTCTTCGAGAAGCGCGTTGGAGACTACC 28507 Query 53063 AAA 53065 ||| Sbjct 28506 AAA 28504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051430978400