Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017-
04-24] 2,027 sequences; 27,920,864 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1032 104 2e-17
>seq1032
Length=45607
Score = 104 bits (114), Expect = 2e-17
Identities = 355/543 (65%), Gaps = 18/543 (3%)
Strand=Plus/Minus
Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591
||||||| | |||||| | || || | |||| ||||| || |||||| | |||||
Sbjct 29037 TCAACGCCATCGACAATATCCCTTGCATCCGCAGAAAGGCGGACTGGGCACTCCGATGGA 28978
Query 52592 TCGAAAACGACAA-AGCC--ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAG 52648
|| | |||||| ||| || || ||| || ||| | || || ||| ||| ||||
Sbjct 28977 TC---AGCGACAAGAGCTCGACCTTCGCCATGCGACTGATTGCCTTCGCTGCAGTTGAAG 28921
Query 52649 GTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATG 52707
|| | || || || || ||||| | || || | | || || | ||| | | |||
Sbjct 28920 GTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGTC-TCATG 28862
Query 52708 CCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTT 52767
|| || |||||||| ||||||| | || |||||||||||||| |||||||| || ||
Sbjct 28861 CCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAAGGCATGCACACCGACTTC 28802
Query 52768 GCGTGTTTG-TATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGA 52826
||||| || | || | | | | | || | || ||| | | | | |||
Sbjct 28801 GCGTGCCTGCTGTTCT----CTCACCTGAAGAACAAGCCCTCAAAGGCTGTCGTAC-AGA 28747
Query 52827 -CATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTAT 52885
||| | |||||||| | || || | ||||| | || ||||| | |||
Sbjct 28746 GCATCATCGTCGAGGCCGTTGCGATCGAGCAGGAGTTCCTGACAGACGCCCTCCCCTGCG 28687
Query 52886 CATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGAC 52945
|| | | ||||||||||| | | |||||| ||||||| || ||||| || ||| | |
Sbjct 28686 CACTCCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAATTTGTGGCCGACCGTC 28627
Query 52946 TGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGA 53005
|| | || |||||| | | ||| | ||| || || ||||| || || |||
Sbjct 28626 TGCTCCTGGCGCTCGGCAACCAGAAGTTCTACAACGCCACCAACCCGTTCGACTTCATGG 28567
Query 53006 ACAACATATCGCTCGAGGGCAAAACAAA---CTTTTTCGAGAGACGTGTGGGCGAGTACA 53062
| || || ||||| | ||||| || || ||| ||||||| || || || || |||
Sbjct 28566 AGAATATCTCGCTGGGTGGCAAGACCAACTTCTTCTTCGAGAAGCGCGTTGGAGACTACC 28507
Query 53063 AAA 53065
|||
Sbjct 28506 AAA 28504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496051430978400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |