Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017-
04-24] 2,027 sequences; 27,920,864 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq1032 96.9 4e-15
>seq1032
Length=45607
Score = 96.9 bits (106), Expect = 4e-15
Identities = 266/402 (66%), Gaps = 7/402 (2%)
Strand=Plus/Minus
Query 50436 AGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAG 50494
|||||||||| | || || ||||| ||||||| |||| || | | || || | | |
Sbjct 28928 AGTTGAAGGTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGG 28869
Query 50495 GCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACA 50554
| | ||||| || |||||||| ||||||| | || |||||||||||||| |||||||
Sbjct 28868 TC-TCATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAAGGCATGCACA 28810
Query 50555 CAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAA 50614
| ||||| ||||| || | | | | | | || | || ||| | |
Sbjct 28809 CCGACTTCGCGTGCCTGCTGTTC---TCTCACCTGAAGAACAAGCCCTCAAAGGCTGTCG 28753
Query 50615 TTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTAC 50674
| | ||| || || ||||| | ||||| | ||||| | || ||||| | |
Sbjct 28752 TACAGAGCATCATCGTCGAGGCCGTTGCGATCGAGCAGGAGTTCCTGACAGACGCCCTCC 28693
Query 50675 CCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAG 50734
|| ||| | | ||||||||||| | | |||||| |||||||||| ||||| || |
Sbjct 28692 CCTGCGCACTCCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAATTTGTGGCCG 28633
Query 50735 ACAGATTGTTGTTGCAGCTGGGACAACC-GAAATACTATAATGCACGTAACCCCTTTCCG 50793
|| | || | || ||| || ||||| ||| | ||| || || ||||| ||
Sbjct 28632 ACCGTCTGCTCCTGGCGCTCGG-CAACCAGAAGTTCTACAACGCCACCAACCCGTTCGAC 28574
Query 50794 TTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTC 50835
|| ||| | || || ||| ||| ||||| || ||||| |||
Sbjct 28573 TTCATGGAGAATATCTCGCTGGGTGGCAAGACCAACTTCTTC 28532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507001553522640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |