Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1032 96.9 4e-15 >seq1032 Length=45607 Score = 96.9 bits (106), Expect = 4e-15 Identities = 266/402 (66%), Gaps = 7/402 (2%) Strand=Plus/Minus Query 50436 AGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAG 50494 |||||||||| | || || ||||| ||||||| |||| || | | || || | | | Sbjct 28928 AGTTGAAGGTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGG 28869 Query 50495 GCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACA 50554 | | ||||| || |||||||| ||||||| | || |||||||||||||| ||||||| Sbjct 28868 TC-TCATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAAGGCATGCACA 28810 Query 50555 CAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAA 50614 | ||||| ||||| || | | | | | | || | || ||| | | Sbjct 28809 CCGACTTCGCGTGCCTGCTGTTC---TCTCACCTGAAGAACAAGCCCTCAAAGGCTGTCG 28753 Query 50615 TTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTAC 50674 | | ||| || || ||||| | ||||| | ||||| | || ||||| | | Sbjct 28752 TACAGAGCATCATCGTCGAGGCCGTTGCGATCGAGCAGGAGTTCCTGACAGACGCCCTCC 28693 Query 50675 CCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAG 50734 || ||| | | ||||||||||| | | |||||| |||||||||| ||||| || | Sbjct 28692 CCTGCGCACTCCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAATTTGTGGCCG 28633 Query 50735 ACAGATTGTTGTTGCAGCTGGGACAACC-GAAATACTATAATGCACGTAACCCCTTTCCG 50793 || | || | || ||| || ||||| ||| | ||| || || ||||| || Sbjct 28632 ACCGTCTGCTCCTGGCGCTCGG-CAACCAGAAGTTCTACAACGCCACCAACCCGTTCGAC 28574 Query 50794 TTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTC 50835 || ||| | || || ||| ||| ||||| || ||||| ||| Sbjct 28573 TTCATGGAGAATATCTCGCTGGGTGGCAAGACCAACTTCTTC 28532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507001553522640