Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1032 219 6e-52 seq1111 116 5e-21 seq721 114 2e-20 >seq1032 Length=45607 Score = 219 bits (242), Expect = 6e-52 Identities = 571/859 (66%), Gaps = 50/859 (6%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| | || || || ||||| | ||| ||| | ||||| Sbjct 29353 ATATGGAACATGTACAAGAAGGCCGAAGCATCATTCTGGACTGCCGAGGAGATTGATCTA 29294 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTAT--AT 125136 || ||||| ||| | || ||| | | || | || || || |||| |||| | || Sbjct 29293 TCAAAGGATCTGCATGACTGGAACAAGCGCCTCACCGAC---GA-CGAGCGTTTCTTCAT 29238 Query 125137 CGCACATTTTG--GCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 | ||||| || || ||||| |||| || ||||| ||||||||||| || ||| || Sbjct 29237 CTCACATGTTCTTGCATTCTTCGCCGCATCAGATGGCATCGTCAACGAGAACCTGGTGGA 29178 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 ||| ||| || |||| | || || | ||||| || |||||||| ||||| Sbjct 29177 ACGCTTCAGCGCCGAAGTGACAGTACCCGAAGCACGATGCTTCTATGGATTCCAGATCAT 29118 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | |||||||| | ||||| || || |||| |||||| |||| || Sbjct 29117 GATGGAGAACATCCACTCGGAGACATACTCCCTCCTCATCGACACATACATTAGCGAGCC 29058 Query 125315 ---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 ||||| |||| | || || ||||| ||||||| | || | || || | ||| Sbjct 29057 CAAACAACG--AACATA-CCTGTTCAACGCCATCGACAATATCCCTTGCATCCGCAGAAA 29001 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| | |||| | || |||||| ||| | | || | | |||| ||||| | Sbjct 29000 GGCGGACTGGGCACTCCGATGGATCAGCGACAAGAGCTCGACCTTCGCCATGCGACTGAT 28941 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || ||||| || || || || |||||||| || || ||||| ||||||| ||||| Sbjct 28940 TGCCTTCGCTGCAGTTGAAGGTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCTGGCT 28881 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 |||||||| || |||||||| || || ||| | |||||| | || || || ||||| Sbjct 28880 GAAGAAGCGTGGTCTCATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGA 28821 Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAG 125611 ||| | ||| ||||| || || ||||| || || | || || Sbjct 28820 AGGCATGCACACCGACTTCGCGTGCCTGCTGTT------CTCTCACC--------TGAAG 28775 Query 125612 ATCCAGCGATGAAAAG--GTC------ATCAACATTGTAACCGATGCCGTGAGGATAGAA 125663 | | ||| | ||| | ||| | || ||| || ||| ||||| ||| || Sbjct 28774 AACAAGCCCTCAAAGGCTGTCGTACAGAGCATCATCGT---CGAGGCCGTTGCGATCGAG 28718 Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAAT 125722 || ||||| || || || |||| || | ||| | | ||||||||| ||||| || Sbjct 28717 CAGGAGTTCCTGACAGACGCCCT-CCCCTGCGCACTCCTCGGCATGAACGCTAAGCTCAT 28659 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG---CCGCAA 125779 |||| ||||||| || |||||||| || ||||| || | | | | || || || Sbjct 28658 GTGCCAGTACATTGAATTTGTGGCCGACCGTCTGCT---CCTGGCGCTCGGCAACCAGAA 28602 Query 125780 GATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGAC 125839 | | |||||||||| || || || || |||||| | || || || | || ||||| Sbjct 28601 GTTCTACAACGCCACCAACCCGTTCGACTTCATGGAGAATATCTCGCTGGGTGGCAAGAC 28542 Query 125840 CAA---CTTTTTCGAGAAG 125855 ||| ||| ||||||||| Sbjct 28541 CAACTTCTTCTTCGAGAAG 28523 >seq1111 Length=185172 Score = 116 bits (128), Expect = 5e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || |||||||||||||| || |||||||| |||| || | | ||| ||| Sbjct 16814 GGAGACCTTGGGCCAGTGTACGGCTTTCAGTGGAGACACTTTGGAGCAGAATATAAGGAC 16755 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTCT 70185 ||| | || ||||| | || ||||| || |||||| || | || | ||||| | | || Sbjct 16754 TGCCATACGGACTACACTGGGCAGGGCGTAGATCAACTGGCCGA-AGTCATTCATAAGCT 16696 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 || || ||||| || ||||||||| | |||| | |||||||||||||||| || | Sbjct 16695 GAAAACAAATCCTTATGACAGGAGGATCATCATGTCCGCATGGAATCCTGCAGACATGAA 16636 Query 70246 CCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC 70288 | ||||| ||||| || || ||| || || ||||| ||| Sbjct 16635 GAAGATGGCTCTACCGCCATGCCACATGTTCGCCCAGTTCTAC 16593 >seq721 Length=104476 Score = 114 bits (126), Expect = 2e-20 Identities = 319/484 (66%), Gaps = 4/484 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| || || || |||||| | ||| | || | || || |||||||| || Sbjct 60130 CAAGGTGGCAACAAGCGTCCTGGCGCTTTTGCCATTTATCTCGAGCCATGGCACGCCGAT 60189 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || | ||||| ||| || ||||| | || || | ||| Sbjct 60190 GTCATTTCTTTCATGGATCTACGCAAGAACCACGGAAAGGAAGAAGTTCGCGCTCGCGAC 60249 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| | || || ||| | || ||| ||||||||||||| || | | | | | Sbjct 60250 CTGTTCTTCGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTGGAACAGAACGCCGAA 60309 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| || || |||||||| | ||| | || || || || Sbjct 60310 TGGACCCTGATGTGCCCCAACGAGTGTCCCGGTCTTGCTGATGTGTACGGTGACGAATTC 60369 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGAT-ACGTGAGACGAGTCGATGCACG 97174 |||| ||||| ||||||| |||| || || ||| ||||| || ||| | Sbjct 60370 GAGGAGCTTTACACTCGCTACGAGAAAGAAGGTCGGGGACGCGAGACTGTGCG-TGCTC- 60427 Query 97175 AGAAC-TGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| | ||| | ||||| || || ||| |||||||| || | ||| |||| Sbjct 60428 AGAAGATCTGGTATGCCATTCTGGAAGCCCAGACGGAGACTGGCGGACCTTTCATCCTCT 60487 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| | | || ||||| |||||||| | | || || |||||| |||||| Sbjct 60488 ACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAATCTCGGAACGATCAAGAGCTCCA 60547 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | ||||||| || || | |||||| | | || || || || || ||| ||| | Sbjct 60548 ACTTGTGCACAGAGATCATCGAGTACACTGCACCTGATGAAGTCGCCGTATGCAATCTTG 60607 Query 97354 CATC 97357 |||| Sbjct 60608 CATC 60611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741040423412520