Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1032 141 9e-29 seq1917 98.7 9e-16 seq1019 82.4 7e-11 >seq1032 Length=45607 Score = 141 bits (156), Expect = 9e-29 Identities = 345/517 (67%), Gaps = 8/517 (2%) Strand=Plus/Minus Query 46083 TATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGC 46142 ||| || ||| | |||| || | |||||||| | ||||||| | || | | | Sbjct 29021 TATCCCTTGCATCCGCAGAAAGGCGGACTGGGCACTCCGATGGATCAGCGACAAGAGCTC 28962 Query 46143 GACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG 46202 ||| |||||| ||| || | ||||| || || || || |||| || || || Sbjct 28961 GACCTTCGCCATGCGACTGATTGCCTTCGCTGCAGTTGAAGGTATCTTCTTCTCCGGATC 28902 Query 46203 TTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 ||||| ||||||| | | || || | || | ||||||| || || ||||| || Sbjct 28901 CTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGTC-TCATGCCTGGTCTCACGTTCTCCA 28843 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACA 46321 ||||||| || ||||||||||| ||| |||| || ||||| ||||| || || | | Sbjct 28842 ACGAGCTCATCTCGCGCGACGAAGGCATGCACACCGACTTCGCGTGCCTG--CTGTT-CT 28786 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGG 46381 ||| | || | |||||| | | ||| | |||||| || ||||| || | Sbjct 28785 CTCACCTGAAGAACAAGCCCTCAAAGGCTGTCGTACAGAGCATCATCGTCGAGGCCGTTG 28726 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441 | || ||| ||||||| | || | ||| || ||| || || || ||||||||||| Sbjct 28725 CGATCGAGCAGGAGTTCCTGACAGACGCCCTCCCCTGCGCACTCCTCGGCATGAACGCTA 28666 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC 46501 || |||||| | ||||| || ||||| || ||||| |||||| || ||| | | | Sbjct 28665 AGCTCATGTGCCAGTACATTGAATTTGTGGCCGACCGTCTGCTCCTGGCGCTCGGCAACC 28606 Query 46502 CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCA 46561 |||| | |||| ||| || || || || ||| | || ||||| |||| |||| Sbjct 28605 AGAAGTTCTACAACGCCACCAACCCGTTCGACTTCATGGAGAATATCTCGCTGGGTGGCA 28546 Query 46562 AAACTAA---TTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | || || || ||||| |||||||| || || || Sbjct 28545 AGACCAACTTCTTCTTCGAGAAGCGCGTTGGAGACTA 28509 >seq1917 Length=9250 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||||| ||| || || | || |||||| ||||||||||| || | Sbjct 8948 CCACCACGCAAACGCAACACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCTGAC 9007 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | ||||||||||||| | || | ||||||||||||||| ||| Sbjct 9008 AAAGTACGACCATCTTCCAACTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCCGGTGGG 9067 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 9068 ATTCCCTCCTTGTC 9081 >seq1019 Length=44428 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| ||||||||||| || | ||||| |||||| ||||||||||| Sbjct 44419 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCG 44360 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTC 131135 || |||| || ||||||||||||||||| || || || Sbjct 44359 GCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTC 44322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472000840375680