Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq590 120 2e-22 seq1917 116 2e-21 >seq590 Length=62005 Score = 120 bits (132), Expect = 2e-22 Identities = 210/306 (69%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| || ||| | |||||||||||||| ||| | ||| ||||||| || || | Sbjct 35758 ATGTCGCTGACCCCTTCTACCGCTACAAGATGGAGAAAATCCAGTCCAAGGTGGAAGGCA 35699 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 | || ||||| || ||||||||||| || ||| || ||||||| | ||||| | Sbjct 35698 AAGGCAACGGCATCAAAACCGTCATCGTGAACTTGAGCCAAGTCGCATACCAGCTCGCTC 35639 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | || | | ||| | ||||| ||||| | || || ||||| ||||| | | | Sbjct 35638 GTCCACCAAACTATGTCATCAAATACTTCGGCTTTGAGCTCGGCGCCCAGACCAATGTCG 35579 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 ||| ||| |||| |||| ||| | || || | || | | |||||||||||| | Sbjct 35578 ATCCCAAGGACGATCGCTGGATCATCAATGGCGCCCACGAGGCCAGCAAGCTGCAGGATT 35519 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || ||||| || || |||||| || ||||| ||||||| | ||||||||||| | Sbjct 35518 ATCTGGACGGTTTCATCAACAAGTTCGTTCTGTGCAAGGAATGCAAGAACCCGGAGACTG 35459 Query 6487 AGCTTA 6492 | ||| Sbjct 35458 TGGTTA 35453 >seq1917 Length=9250 Score = 116 bits (128), Expect = 2e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||||||||||||| || |||||||||||||| ||||| ||||| || ||| Sbjct 8948 CCACCACGCAAACGCAACACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCTGAC 9007 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| | || || || || || || || || || || || || || || | ||| Sbjct 9008 AAAGTACGACCATCTTCCAACTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCCGGTGGG 9067 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| ||| || ||||||||| | || || ||| ||| ||| Sbjct 9068 ATTCCCTCCTTGTCTTGAATCTTGCTCTTCACATTGTCGATCGTGTCTGAGGATTCCACT 9127 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 |||| ||||| || || || || | || || |||||| Sbjct 9128 TCTAGCGTAATCGTCTTTCCTGTGAGTGTCTTGACGAAT 9166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938925443437