Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1917 105 6e-18 seq721 91.5 1e-13 >seq1917 Length=9250 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| | || || ||||||||| || | || || | ||| || | || Sbjct 9150 ACAGGAAAGACGATTACGCTAGAAGTGGAATCCTCAGACACGATCGACAATGTGAAGAGC 9091 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||||||||| || ||||| || || || ||||| || || || ||||| Sbjct 9090 AAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTGATTTTCGCAGGCAAG 9031 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || ||| || || | || || ||||||||||| || || ||| | || Sbjct 9030 CAGTTGGAAGATGGTCGTACTTTGTCAGACTACAACATTCAGAAGGAGAGCACTCTGCAC 8971 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| ||||| || || Sbjct 8970 TTGGTGTTGCGTTTGCGTGGTGG 8948 >seq721 Length=104476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 264/402 (66%), Gaps = 17/402 (4%) Strand=Plus/Minus Query 130014 TTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTT- 130072 ||| || || ||||| |||| |||||| | |||||||||| | |||| || || || Sbjct 60297 TTCCACACGCTTCATGAACAGATCGGGGATCCACAGGGCGAAGAACAGGTCGCGAGCGCG 60238 Query 130073 ---TTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATG---TCGG 130126 |||| |||| | | || ||| || || | |||| ||||| |||| Sbjct 60237 AACTTCT-TCCTTTCCGTGGTTCTTGCGT---AGATCCATGAAAG---AAATGACATCGG 60185 Query 130127 CGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAA 130183 ||||||| || || | |||||| || | ||||| || ||| || ||||| || | Sbjct 60184 CGTGCCATGGCTCGAGATAAATGGCAAAAGCGCCAGGACGCTTGTTGCCACCTTGATCGA 60125 Query 130184 CGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGT 130243 | | || | | ||||||||||| || | ||| | || ||||||| ||||||| Sbjct 60124 CATAACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGATGTGCCGT 60065 Query 130244 TTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGC 130303 | |||| ||||| | || || |||| || ||| | | ||||| || || | Sbjct 60064 TCGTGCCAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCGATACCAC 60005 Query 130304 CGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGT 130363 | || ||||| |||| |||||| || || || ||||| || | || |||| Sbjct 60004 CAGCATTCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCAATGCTGT 59945 Query 130364 CTTCTTTAATGTTTAGGAGGAAACACGAGGCCAATTGGGCGT 130405 | ||||| |||| | |||||| || || ||||| ||| ||| Sbjct 59944 CGTCTTTCATGTCGATGAGGAAGCAAGAAGCCAACTGGCCGT 59903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717631013255