Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017-
04-24] 2,027 sequences; 27,920,864 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1917 105 6e-18
seq721 91.5 1e-13
>seq1917
Length=9250
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || ||| | || || ||||||||| || | || || | ||| || | ||
Sbjct 9150 ACAGGAAAGACGATTACGCTAGAAGTGGAATCCTCAGACACGATCGACAATGTGAAGAGC 9091
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||||||||||||||| || ||||| || || || ||||| || || || |||||
Sbjct 9090 AAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTGATTTTCGCAGGCAAG 9031
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||||| || ||| || || | || || ||||||||||| || || ||| | ||
Sbjct 9030 CAGTTGGAAGATGGTCGTACTTTGTCAGACTACAACATTCAGAAGGAGAGCACTCTGCAC 8971
Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445
|| || ||||| ||||| || ||
Sbjct 8970 TTGGTGTTGCGTTTGCGTGGTGG 8948
>seq721
Length=104476
Score = 91.5 bits (100), Expect = 1e-13
Identities = 264/402 (66%), Gaps = 17/402 (4%)
Strand=Plus/Minus
Query 130014 TTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTT- 130072
||| || || ||||| |||| |||||| | |||||||||| | |||| || || ||
Sbjct 60297 TTCCACACGCTTCATGAACAGATCGGGGATCCACAGGGCGAAGAACAGGTCGCGAGCGCG 60238
Query 130073 ---TTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATG---TCGG 130126
|||| |||| | | || ||| || || | |||| ||||| ||||
Sbjct 60237 AACTTCT-TCCTTTCCGTGGTTCTTGCGT---AGATCCATGAAAG---AAATGACATCGG 60185
Query 130127 CGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAA 130183
||||||| || || | |||||| || | ||||| || ||| || ||||| || |
Sbjct 60184 CGTGCCATGGCTCGAGATAAATGGCAAAAGCGCCAGGACGCTTGTTGCCACCTTGATCGA 60125
Query 130184 CGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGT 130243
| | || | | ||||||||||| || | ||| | || ||||||| |||||||
Sbjct 60124 CATAACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGATGTGCCGT 60065
Query 130244 TTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGC 130303
| |||| ||||| | || || |||| || ||| | | ||||| || || |
Sbjct 60064 TCGTGCCAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCGATACCAC 60005
Query 130304 CGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGT 130363
| || ||||| |||| |||||| || || || ||||| || | || ||||
Sbjct 60004 CAGCATTCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCAATGCTGT 59945
Query 130364 CTTCTTTAATGTTTAGGAGGAAACACGAGGCCAATTGGGCGT 130405
| ||||| |||| | |||||| || || ||||| ||| |||
Sbjct 59944 CGTCTTTCATGTCGATGAGGAAGCAAGAAGCCAACTGGCCGT 59903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419717631013255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |