Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1032 140 7e-28 seq751 96.9 7e-15 seq215 89.7 1e-12 >seq1032 Length=45607 Score = 140 bits (154), Expect = 7e-28 Identities = 264/383 (69%), Gaps = 4/383 (1%) Strand=Plus/Plus Query 251565 GAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGC 251624 |||||| || | |||||| |||| ||||| ||||||||||||||| ||||| ||||| Sbjct 28532 GAAGAAGTTGGTCTTGCCACCCAGCGAGATATTCTCCATGAAGTCGAACGGGTTGGTGGC 28591 Query 251625 ATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATA 251684 ||||| ||| | | ||| || || | || | ||||| |||||||| || | || Sbjct 28592 GTTGTAGAACTTCTGGTTGCCGAGCGCCAGGAGCAGACGGTCGGCCACAAATTCAATGTA 28651 Query 251685 CTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGATGA 251743 ||| | ||| || | || ||||||||| | | | || || || | || || | || Sbjct 28652 CTGGCACATGAGCTTAGCGTTCATGCCGAGGAGTGCG-CAGGGGAGGGCGTCTGTCAGGA 28710 Query 251744 ATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGCT 251803 | |||| ||| | ||||| ||||| | | || || || ||| || ||| Sbjct 28711 ACTCCTGCTCGATCGCAACGGCCTCGACGATGATGCTCTGTACGACAGCCTTTGAGGGCT 28770 Query 251804 TGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 |||||| ||| | ||| |||| | || ||| || | | ||||| || |||||||| Sbjct 28771 TGTTCTTCAGGTGAGAGAACAGCAGGCACGCGAAGTCGGT-GTGCATGCCTTCGTCGCGC 28829 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||| ||||||||| | || |||||||| | ||||| ||| | ||||||||| Sbjct 28830 GAGATGAGCTCGTTGGAGAACGTGAGACCAGGCATGAGACCACGCTTCTTCAGCCAGAAG 28889 Query 251923 ATTGCGCAAAAGGATCCAGAGAA 251945 || | ||||||||| ||||| Sbjct 28890 ATGGATGCAAAGGATCCGGAGAA 28912 >seq751 Length=30195 Score = 96.9 bits (106), Expect = 7e-15 Identities = 250/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 87554 TGAAGAAGGCCGGCAATCTTCGCGATGCTTTTGCCAAGAC-GAGCGCACCATTCTTTGTC 87612 ||||||||||||| || || ||| || ||||||| || || || | ||||| | Sbjct 10554 TGAAGAAGGCCGGAAACCTCCGCTGGGCCTTTGCCAGAACAGAAGGCGAC-TTCTTCACC 10496 Query 87613 ATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTAT-GCCATACTT 87671 || || ||||| |||||||| || || |||||| | ||| | || |||| | | Sbjct 10495 ATTTTTGATGCCGACTTCTGTCCACGACCTGACTTCCTGCAGGAGACCATACCCATTCAT 10436 Query 87672 CAACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGTGCGTC--CA 87729 ||| ||| | || || || || ||||| || |||||||| || | || || Sbjct 10435 CAAGCCAGAC-CAGACACGGCTATTGTGCAGACTCCGCAGTTCTT--CCGTACATCTACA 10379 Query 87730 GACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCGCTTCATC 87789 |||||||| ||||| |||| | || || | || ||||| ||||||| || || || Sbjct 10378 GACCAGACATGGGTTGAGCAAGGAGCTGGAGCCGTGCAGGAGTTGTTCTATCGAGTCGTC 10319 Query 87790 CAGGTGTCTCGCGAATCATTT-GGCGCTGCAGTGTGCGTGGGTACTTGTGCTATGTATCG 87848 ||||| ||| |||| ||| ||||| | | || || || | |||| ||||||| Sbjct 10318 CAGGTCAACCGC-AATCGTTTCGGCGCATCCATCTGTGTAGGCAGCAATGCTGTGTATCG 10260 Query 87849 TCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGATGTCCA 87908 || | || ||||| | || || || || || || || ||| |||||||| || Sbjct 10259 ACGAGCCGCGCTGGTCGAGGTAGGGGGTACGGCAGAGATTGGCTTCTCAGAGGATGTTCA 10200 Query 87909 CACCGGTTTCT 87919 |||||| |||| Sbjct 10199 CACCGGCTTCT 10189 >seq215 Length=91810 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 |||| |||||||||||||| || || |||||| | ||||| || || |||||||| | Sbjct 34212 TCATCGGACCCAATGGTGCCGGCAAATCTACCATGATCAAGGTTCTTACTGGCGA-AGTT 34154 Query 280234 AGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | || | ||| |||| ||| ||||||||| ||| |||| || | ||| || || Sbjct 34153 ATCCCGCAGAGTGGTCGAGTTGAGAAGCATCCAAACTTGCGTATAGGCTACATCAAACAA 34094 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||| || | ||| | ||| || || || | ||| || || ||||| |||| ||| Sbjct 34093 CACGCCTTGGAGCACGTTGAGCTTCATCTTGAGAAGACACCCAATCAATATCTTCAATGG 34034 Query 280353 CGCTATGC 280360 || || || Sbjct 34033 CGTTACGC 34026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027810106114707