Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1032 150 3e-31 seq1917 149 1e-30 seq751 123 5e-23 >seq1032 Length=45607 Score = 150 bits (166), Expect = 3e-31 Identities = 299/433 (69%), Gaps = 11/433 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAG---AAGTTGGACTTGCC 9991 |||||| || ||||| ||||| || || || ||||||| ||||||| |||||| Sbjct 28490 CATGACACCGGCCTTTTGGTAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCC 28549 Query 9992 CTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTA 10051 | || || || |||||||||||| || ||||| |||| | ||| ||| Sbjct 28550 ACCCAGCGAGATATTCTCCATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTT 28609 Query 10052 ACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111 ||||| || || | ||||| ||||| || || |||||||||| ||| || | | Sbjct 28610 GCCGAGCGCCAGGAGCAGACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGC 28669 Query 10112 GTTCATGCCAATCA-TGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGA 10170 ||||||||| | | ||| |||||||| |||||| | ||| |||| ||| | || | Sbjct 28670 GTTCATGCCGAGGAGTGC-GCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGATCGCAA 28728 Query 10171 CCGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 | || || ||| |||||||| ||| || | || ||||||||| || | || Sbjct 28729 CGGCCTCGACGATGATGCTCTGTACGACAGCCTTTGAGGGCTTGTTCTTCAGGTGAGAGA 28788 Query 10231 ACAGGA-GCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGAC 10289 |||| | || | | || | | ||| | ||| |||||||| ||||| ||||||||| Sbjct 28789 ACAGCAGGCACGCGAAGTCGGT-GTGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAG 28847 Query 10290 AAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCC 10348 || ||||| |||||||| || || || ||||||||| |||| ||| || || || Sbjct 28848 AACGTGAGACCAGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCA-AAGGATCC 28906 Query 10349 GGAGAACAGAAGA 10361 ||||| |||||| Sbjct 28907 GGAGA--AGAAGA 28917 >seq1917 Length=9250 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || | ||||| |||||||| || ||| ||| || || ||||| || || || Sbjct 8947 TCCACCACGCAAACGCAACACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCTGA 9006 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | |||||||| |||||||| || ||||| || || | || ||||| ||||| Sbjct 9007 CAAAGTACGACCATCTTCCAACTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCCGGTGG 9066 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || ||||||||||||||||| ||| || ||||| ||||||| ||||| || Sbjct 9067 GATTCCCTCCTTGTCTTGAATCTTGCTCTTCACATTGTCGATCGTGTCTGAGGATTCCAC 9126 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| | || || || ||||| ||||| |||||||||||| Sbjct 9127 TTCTAGCGTAATCGTCTTTCCTGTGAGTGTCTTGACGAAT 9166 >seq751 Length=30195 Score = 123 bits (136), Expect = 5e-23 Identities = 254/370 (69%), Gaps = 12/370 (3%) Strand=Plus/Plus Query 59294 AAGCCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGC 59353 ||||| ||||| || ||||| |||||||||||| || || || || | || ||| Sbjct 10191 AAGCCGGTGTGAACATCCTCTGAGAAGCCAATCTCTGCCGTACCCCCTACCTCGACCAGC 10250 Query 59354 GCCTCTCGGCGGTAGACTGCGCATGTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGA 59413 || |||| || || || || | || || || | || |||| || | ||| Sbjct 10251 GCGGCTCGTCGATACACAGCATTGCTGCCTACACAGATGGATGCGCCGAAACGATTGCGG 10310 Query 59414 GAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAA 59473 ||||||| || || ||||||| ||||| |||| |||||| | |||||||||| Sbjct 10311 TTGACCTGGACGACTCGATAGAACAACTCCTGCACGGCTCCAGCTCCTTGCTCAACCCAT 10370 Query 59474 GTCTGGTCGG--GGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCT-TGCCG 59530 |||||||| | | | || ||||||||| || ||||||||||| || | | || | Sbjct 10371 GTCTGGTCTGTAGATGTACG--GAAGAACTGCGGAGTCTGCACAATAGCCGTGTCTG--G 10426 Query 59531 TCATGG---GAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCA 59587 || ||| || | | ||| ||| | |||| ||| ||||||| || ||||||||||| Sbjct 10427 TC-TGGCTTGATGAAT-GGGTATGGTCTCCTGCAGGAAGTCAGGTCGTGGACAGAAGTCG 10484 Query 59588 GCATCGAAGATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCA 59647 ||||| || |||| |||||| | | ||| ||| || || ||| ||||| || Sbjct 10485 GCATCAAAAATGGTGAAGAAGTCGCCTTCTGTTCTGGCAAAGGCCCAGCGGAGGTTTCCG 10544 Query 59648 GCCTTTTTCA 59657 ||||| |||| Sbjct 10545 GCCTTCTTCA 10554 Score = 122 bits (134), Expect = 2e-22 Identities = 174/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 275339 TGAAGAAGGCCGGCAACCTCCGGTCCGCCTTTACCAAGACAGACGGCGAATTCTTTGTCA 275398 ||||||||||||| |||||||| | |||||| ||| ||||| ||||| ||||| || Sbjct 10554 TGAAGAAGGCCGGAAACCTCCGCTGGGCCTTTGCCAGAACAGAAGGCGACTTCTTCACCA 10495 Query 275399 TCTTTGACGCCGACTTCTGCCCAAGGCCCGACTTCCTCGAGGAGACACTTGGCA-GGATG 275457 | ||||| ||||||||||| ||| | || |||||||| ||||||| | || || Sbjct 10494 TTTTTGATGCCGACTTCTGTCCACGACCTGACTTCCTGCAGGAGACCATACCCATTCATC 10435 Query 275458 AAGGCAGATCCCACGATTGCCATCTTCCAAACTCCCCAGTTCTT-CGAGCAGCGCAATGA 275516 ||| |||| | || | || || | || ||||| |||||||| || || | | || Sbjct 10434 AAGCCAGACCAGAC-ACGGCTATTGTGCAGACTCCGCAGTTCTTCCGTACATC-TACAGA 10377 Query 275517 GCAGAACTACGTGGAGAAGGGAGCCGGCGCCGTCCAGGAGCTCTTCTATCGCCTCATCCA 275576 |||| | || ||| | ||||| || ||||| |||||| | |||||||| || |||| Sbjct 10376 CCAGACATGGGTTGAGCAAGGAGCTGGAGCCGTGCAGGAGTTGTTCTATCGAGTCGTCCA 10317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921599048392440