Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1032 309 6e-79 seq721 167 4e-36 >seq1032 Length=45607 Score = 309 bits (342), Expect = 6e-79 Identities = 591/860 (69%), Gaps = 27/860 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 || ||| ||||||||||||||| | || |||||| |||||||||||||| || Sbjct 29353 ATATGGAACATGTACAAGAAGGCCGAAGCATCATTCTGGACTGCCGAGGAGATTGATCTA 29294 Query 42360 GCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 | ||||| | | |||| | | || | || |||| || ||| || | Sbjct 29293 TCAAAGGATCTGCATGACTGGAACAAGCGCCTCACCGACGACGAGCGTTTCTTCATCTCA 29234 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 | | || || ||||||||||| || || ||||| ||||| |||||||||| | Sbjct 29233 CATGTTCTTGCATTCTTCGCCGCATCAGATGGCATCGTCAACGAGAACCTGGTGGAACGC 29174 Query 42477 TTCATGAAAGAGGTG-CAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| || ||| |||||| || || || |||||||| || |||||||| || Sbjct 29173 TTCAGCGCCGAAGTGACAGTACCC-GAAGCACGATGCTTCTATGGATTCCAGATCATGAT 29115 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| || || || |||| ||||| || ||| Sbjct 29114 GGAGAACATCCACTCGGAGACATACTCCCTCCTCATCGACACATACATTAGCGAGCCCAA 29055 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | || | |||||||| ||||| || | || || |||||| | |||||||| Sbjct 29054 ACAACGAACATACCTGTTCAACGCCATCGACAATATCCCTTGCATCCGCAGAAAGGCGGA 28995 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 |||||| ||| |||||| || | | || | | || |||| | | | ||| | |||| Sbjct 28994 CTGGGCACTCCGATGGATC-AGCGACAAGAGCTCGACCTTCGCCATGCGACTGATTGCCT 28936 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | | || || || || ||||||||||| || |||| || |||||||||||||| ||| Sbjct 28935 TCGCTGCAGTTGAAGGTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCTGGCTGAAGA 28876 Query 42775 AG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || ||| || ||||| || ||||| ||||| ||||| |||||| | ||||| || Sbjct 28875 AGCGTGGTCTC-ATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAAGGC 28817 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 |||| | ||||| || ||||| |||||||| ||||| | | |||||||||| ||| Sbjct 28816 ATGCACACCGACTTCGCGTGCCTGCTGTTCTC---TCACCTGAAGAACAAGCCCTCAAAG 28760 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 | || | | ||||||| |||||||| | ||||||| |||||||||| || | Sbjct 28759 GCTGTCGTACAGAGCATCATCGTCGAGGCCGTTGCGATCGAGCAGGAGTTCCTGACAGAC 28700 Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 | || ||| | || ||||||||||| | ||||||||| ||||||| | | Sbjct 28699 GCCCTCCCCTGCGCACTCCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAATTT 28640 Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC------TCTACAACACGCCG 43067 || ||||||| ||| || || ||| ||| || || |||||||| | | Sbjct 28639 GTGGCCGACCGTCTGCT---CC---TGGCGCTCGGCAACCAGAAGTTCTACAACGCCACC 28586 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA---CTTTTTCGAG 43124 ||| |||||||| |||||||| |||||| ||| ||||||||||| ||| |||||| Sbjct 28585 AACCCGTTCGACTTCATGGAGAATATCTCGCTGGGTGGCAAGACCAACTTCTTCTTCGAG 28526 Query 43125 AAGCGCGTCGCCGACTACCA 43144 |||||||| | |||||||| Sbjct 28525 AAGCGCGTTGGAGACTACCA 28506 >seq721 Length=104476 Score = 167 bits (184), Expect = 4e-36 Identities = 829/1310 (63%), Gaps = 34/1310 (3%) Strand=Plus/Minus Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356 ||||||||| || |||| ||| ||||| ||| || || || |||||| ||| Sbjct 60987 GCCCCACATATCGTACTGAAGCTCGCCCTTTGAGACTGGAGAACCTTCATAGGTCTCGTA 60928 Query 244357 GGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTC 244416 ||||| || |||||| | ||| || || || || | |||||||||||| Sbjct 60927 AGGACCAAGCTTCTTGGCCAGATCACAAGAGGCGGTAAGAGCAGCATGGTAGATGGTCTC 60868 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||||| |||||| || || |||| | | ||| || || | | | Sbjct 60867 GAAGATCTGGATGTTCAGCTCACGAGCCTCGGGCGACTCGAATGGCATACGAAGAGCAAG 60808 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| | || || || || || || | |||||||| ||||| ||| ||||| Sbjct 60807 GAAGGCATCAGCAAGACCGCTAACACCAAGACCGATGGGCCTGTGGCGCATGTTGCTCTT 60748 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 | |||| || ||||| || || |||| | ||||| | |||||| || || ||||| Sbjct 60747 CTTGGCCTCTGGCACTGGATAGTGGTTGACCTCGATGATCTTGTTCAGATTCTTGGTGAC 60688 Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGT 244656 || | || || || |||| ||| ||||| ||| | | | |||| | Sbjct 60687 CACCTGAACAACCTCATGCAGCTTCTGGAAGTCAAACTTCTCG---TTCTCGAGG----- 60636 Query 244657 GATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGA 244716 || || | | | ||| || | || | || ||||| ||||| || || || | Sbjct 60635 --TCGACATAGGTTGGCAGAGCAAGA-GATG-CAAGATTGCATACGGCGACTTCATC--A 60582 Query 244717 GTTG--GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGC 244774 | || ||||||| || ||||| ||||| | ||| || |||||| || || || | | Sbjct 60581 GGTGCAGTGTACTCGATGATCTCTGTGCACAAGTTGGAGCTCTTGATCGTTCCGAGATTC 60522 Query 244775 TGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 | || ||| |||| |||| || ||||||||||| ||||| || || || ||||| Sbjct 60521 TTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAAGGTCCGCCAGTCTCC 60462 Query 244835 AGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG 244894 |||||| | || | | | ||||| | | ||| || ||| ||| || Sbjct 60461 GTCTGGGCTTCCAGAATGGCATACCAGATCTTCTGAGCACGCACAGTCTCGCGTCCCCGA 60402 Query 244895 CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGG 244954 || ||| ||||||||| ||||| || ||||||| ||| || | || || | || Sbjct 60401 CCTTCTTTCTCGTAGCGAGTGTAAAGCTCCTCGAATTCGTCACCGTACACATCAGCAAGA 60342 Query 244955 CCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATG 245014 ||||| ||| |||||||| || |||| ||| || | | || | || |||| Sbjct 60341 CCGGGACACTCGTTGGGGCACATCAGGGTCCATTCGGCGTTCTGTTCCACACGCTTCATG 60282 Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 || || ||||||||||| ||||| ||| ||||| | | | || ||| || Sbjct 60281 AACAGATCGGGGATCCACAGGGCGAAGAACAGGTCGCGAGCGCGAACTTCTTCCTTTCCG 60222 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 |||||| | || |||| || || ||| ||| ||||||| ||||| | || | Sbjct 60221 TGGTTCTTGCGTAGATCCATGAAAGAAATGACATCGGCGTGCCATGGCTCGAGATAAATG 60162 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTT 245190 || | ||||| || ||||||||||| || || || | | | ||||| ||| Sbjct 60161 GCAAAAGCGCCAGGACGCTTGTTGCCACCTTGATCGA----CATAACGAGCTGTGTTGTT 60106 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 | ||| || || | || | | |||||| || |||||| ||||| ||||||| Sbjct 60105 GTAGACACGAAGCATGGGAATCAGGCCGTTGGATGTGCCGTTCGTGCCAGCAATGTAGGA 60046 Query 245251 GCCCTTGCCCCTGAGGTTGCTGA---TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGAT 245307 || || | | || || ||| | || | || | || || || | ||| ||||| Sbjct 60045 TCCGGTGGCAC-GAATTTTGTGACAGTTGAGA--CCGATACCACCAGCATTCTTTGAGAT 59989 Query 245308 GAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAG 245367 | ||||| | || | || || || ||||| |||||||| ||||||| || Sbjct 59988 CATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCAATGCTGTCGTCTTTCATGTCGAT 59929 Query 245368 CAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGC 245427 || ||||| || | || |||| || || | | | | ||||||| || || || Sbjct 59928 GAGGAAGCAAGAAGCCAACTGGCCGTTCGGCGTACCAGCGCTGAACAGTGTTGGTGATGC 59869 Query 245428 GTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTC 245487 ||| || ||||| |||| | | | ||| |||| || || ||||| | ||| Sbjct 59868 GTGTGTGAAGTACTTATTCGACATGTAGTTGTATGTCTCGATGGCGGCCTCGATATCGTC 59809 Query 245488 GCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTC 245547 ||||| || | || | ||||| ||||||| || ||||| | | || | Sbjct 59808 TCCGTGAATTCCGACTGCTACACGCATGATCATGTGCTGCGGTCTCTCG--GCGACCTTG 59751 Query 245548 GGGTC--CCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 || | ||||| ||| |||||||| ||||| ||||| |||||||| Sbjct 59750 CCATCGATCCGGAGCAGGTATGAGCGCTCTAGCGTTTTGAAGCCAAAGTA 59701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944315272805520