Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017-
04-24] 2,027 sequences; 27,920,864 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1917 105 2e-17
seq11 84.2 5e-11
>seq1917
Length=9250
Score = 105 bits (116), Expect = 2e-17
Identities = 139/190 (73%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336
||||| || || || || || ||||| | | || || || ||||| || || || |||
Sbjct 8978 GTGCTCTCCTTCTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCCAACTGCTTGCCT 9037
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TT 288395
||||| ||||||||||| || ||||||||| || || || || || || ||| ||
Sbjct 9038 GCGAAAATCAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTT-GCTCTT 9096
Query 288396 CACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455
||| || || || | || ||||| ||||| ||||| |||||||| || || || ||
Sbjct 9097 CACATTGTCGATCGTGTCTGAGGATTCCACTTCTAGCGTAATCGTCTTTCCTGTGAGTGT 9156
Query 288456 CTTGACGAAT 288465
||||||||||
Sbjct 9157 CTTGACGAAT 9166
>seq11
Length=17923
Score = 84.2 bits (92), Expect = 5e-11
Identities = 234/350 (67%), Gaps = 12/350 (3%)
Strand=Plus/Minus
Query 326032 AAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCAT 326091
|||||| |||| ||||| ||||||| ||||| ||| || |||||||||||
Sbjct 11129 AAAGTTGATGAGAAGACCCTTGATGTGAGAGCCGTCGTGATCTTGATCTGTCATGATCAT 11070
Query 326092 CACATGACCGTAACGAAGCGAGGACGT--GTCTTTGTACACT-TTACCGGTT-TGAAGGC 326147
| ||| || ||||| |||| | | || | ||| ||| || | || || ||||
Sbjct 11069 AATATGTCCATAACG----GAGGCCTTTGGTGTCGGTATACTGTTTCTTGTGCTGCAGGC 11014
Query 326148 CGA-GAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GATGC 326205
| | ||| || || | ||| ||||| ||||||||| ||| || | || || ||
Sbjct 11013 CAATGAACTTCTTGATGTTCTGA-ATTTCGGCGTTCTTCGAGAT-CTGGTCAATTGAAGC 10956
Query 326206 ATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGAC 326265
|||||||||||||| | || ||||| || || ||||| ||| | || | |||
Sbjct 10955 ATCGCGGACGTTCAGGACCTTACCACGTAGCGGAAACACGCCAAACAAATCAGGGTTGAC 10896
Query 326266 CACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGT 326325
||| | | ||||| | ||| || || || || || || || ||||| ||||||||
Sbjct 10895 CACAGCGCGACCTGCCAGTGCTAGCAGTGCGGCAGAGTCACCTTCGGTCAGGATGAGAGT 10836
Query 326326 GCACATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGG 326375
|||||| | || || || || || || | ||||| |||| ||||
Sbjct 10835 GCACATATGGCCGTCTTTAGTGCCGGCTTTGTTGGCATCAGTGAGCTTGG 10786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179623763269306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |