Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1917 105 2e-17 seq11 84.2 5e-11 >seq1917 Length=9250 Score = 105 bits (116), Expect = 2e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || || || || ||||| | | || || || ||||| || || || ||| Sbjct 8978 GTGCTCTCCTTCTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCCAACTGCTTGCCT 9037 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TT 288395 ||||| ||||||||||| || ||||||||| || || || || || || ||| || Sbjct 9038 GCGAAAATCAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTT-GCTCTT 9096 Query 288396 CACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 ||| || || || | || ||||| ||||| ||||| |||||||| || || || || Sbjct 9097 CACATTGTCGATCGTGTCTGAGGATTCCACTTCTAGCGTAATCGTCTTTCCTGTGAGTGT 9156 Query 288456 CTTGACGAAT 288465 |||||||||| Sbjct 9157 CTTGACGAAT 9166 >seq11 Length=17923 Score = 84.2 bits (92), Expect = 5e-11 Identities = 234/350 (67%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 326032 AAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCAT 326091 |||||| |||| ||||| ||||||| ||||| ||| || ||||||||||| Sbjct 11129 AAAGTTGATGAGAAGACCCTTGATGTGAGAGCCGTCGTGATCTTGATCTGTCATGATCAT 11070 Query 326092 CACATGACCGTAACGAAGCGAGGACGT--GTCTTTGTACACT-TTACCGGTT-TGAAGGC 326147 | ||| || ||||| |||| | | || | ||| ||| || | || || |||| Sbjct 11069 AATATGTCCATAACG----GAGGCCTTTGGTGTCGGTATACTGTTTCTTGTGCTGCAGGC 11014 Query 326148 CGA-GAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GATGC 326205 | | ||| || || | ||| ||||| ||||||||| ||| || | || || || Sbjct 11013 CAATGAACTTCTTGATGTTCTGA-ATTTCGGCGTTCTTCGAGAT-CTGGTCAATTGAAGC 10956 Query 326206 ATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGAC 326265 |||||||||||||| | || ||||| || || ||||| ||| | || | ||| Sbjct 10955 ATCGCGGACGTTCAGGACCTTACCACGTAGCGGAAACACGCCAAACAAATCAGGGTTGAC 10896 Query 326266 CACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGT 326325 ||| | | ||||| | ||| || || || || || || || ||||| |||||||| Sbjct 10895 CACAGCGCGACCTGCCAGTGCTAGCAGTGCGGCAGAGTCACCTTCGGTCAGGATGAGAGT 10836 Query 326326 GCACATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGG 326375 |||||| | || || || || || || | ||||| |||| |||| Sbjct 10835 GCACATATGGCCGTCTTTAGTGCCGGCTTTGTTGGCATCAGTGAGCTTGG 10786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179623763269306