Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq721 125 9e-24 seq1032 96.9 4e-15 seq11 82.4 9e-11 >seq721 Length=104476 Score = 125 bits (138), Expect = 9e-24 Identities = 609/958 (64%), Gaps = 17/958 (2%) Strand=Plus/Minus Query 114371 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 114430 ||||| | | | || ||||| |||||||| |||| | ||||| ||||| | | | Sbjct 60716 TCGATGATCTTGTTCAGATTCTTGGTGACCACCTGAACAACCTCATGCAGCTTCTGGAAG 60657 Query 114431 TCAAAACTGCGAGT-CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 114489 ||||| || | || ||| | |||||| | || || || | || || ||||| || Sbjct 60656 TCAAA-CTTCTCGTTCTCGAGGTCGACATAGGTTGGCAGAGCAAGAGATGCAAGATTGCA 60598 Query 114490 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 114549 || | | ||||| |||||||||| || || || || ||||| || || ||||| Sbjct 60597 TACGGCGACTTCATCAGGTGCAGTGTACTCGATGATCTCTGTGCACAAGTTGGAGCTCTT 60538 Query 114550 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 114609 || || || | ||||| || || ||| ||| ||||||||||| || ||| | Sbjct 60537 GATCGTTCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAA 60478 Query 114610 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCA 114668 || || |||||||| |||| | ||||| || | ||||| | || | || ||| Sbjct 60477 AGGTCCGCCAGTCTCCGTCTGGGCTTCCAGAATGGCATACCAGATCTTCTG-AGCACGCA 60419 Query 114669 CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCAC 114728 |||| || | || || || | |||||| ||||| || | || || || |||| Sbjct 60418 CAGTCTCGCGTCCCCGACCTTCTTTCTCGTAGCGAGTGTAAAGCTCCTCGAATTCGTCAC 60359 Query 114729 CCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCT 114788 | | || | || || || || | ||||| | || | ||||| | || Sbjct 60358 CGTACACATCAGCAAGACCGGGACACTCGTTGGGGCACATCAGGGTCCATTCGGCGTTCT 60299 Query 114789 CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGC 114848 || |||||||||||||| || || |||||||| || || |||| || || ||| || Sbjct 60298 GTTCCACACGCTTCATGAACAGATCGGGGATCCACAGGGCGAAGAACAGGTCGCGAGCGC 60239 Query 114849 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 114908 || ||||||| | || || || || | |||| || |||| ||| ||||||| Sbjct 60238 GAACTTCTTCCTTTCCGTGGTTCTTGCGTAGATCCATGAAAGAAATGACATCGGCGTGCC 60179 Query 114909 ACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACAT 114962 | || || || || | || | | || | |||| ||| | || | |||| Sbjct 60178 ATGGCTCGAGATAAATGGCAAAAGCGCC---AGGACGCTTGTTGCCACCTTGATCGACAT 60122 Query 114963 ACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 115022 | | |||||| || | || |||||||| ||||| | || | ||| ||| || | Sbjct 60121 AACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGATGTGCCGTTCG 60062 Query 115023 TCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTG 115082 | || ||| || |||| | | | || || | ||| ||||| || | Sbjct 60061 TGCCAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCGATACCACCAG 60002 Query 115083 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCAC 115142 | ||||||||| ||||| | || | |||| || || || || ||| Sbjct 60001 CATTCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCAATGCTGTCGT 59942 Query 115143 CCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT-GGTGTACCAGCGTTGAAG 115201 | || | |||| |||||||| | || || | | || || ||||||||| |||| Sbjct 59941 CTTTCATGTCGATGAGGAAGCAAGAAGCCAACTG-GCCGTTCGGCGTACCAGCGCTGAAC 59883 Query 115202 AGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGAC 115260 || ||||||| ||||| |||| ||| | | ||||| | | ||| ||||| | | | Sbjct 59882 AGTGTTGGTGATGCGTGTGTGAA-GTACTTATTCGACATGTAGTTGTATGTCTCGATGGC 59824 Query 115261 GGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 115318 ||| || || || |||||||| |||| | || ||||| | ||||| || ||| Sbjct 59823 GGCCTCGATATCGTCTCCGTGAATTCCGACTGCTACACGCATGATCATGTGCTGCGGT 59766 >seq1032 Length=45607 Score = 96.9 bits (106), Expect = 4e-15 Identities = 296/452 (65%), Gaps = 23/452 (5%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAG---TTTGTCTTCCCGTCCAAGCTGATATTCTC 125814 |||||| ||||| ||||||||||||||| || ||||| || ||| ||||||||| Sbjct 28508 GTAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCACCCAGCGAGATATTCTC 28567 Query 125815 CATAAAATCAAATGGGTTCTTTGAGTTCCA-AATTGTTGGCACCCCAATCTGTTTGAGGA 125873 ||| || || || ||||| | | ||| | || | ||| || | | ||| | Sbjct 28568 CATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGAG-CGCCAGGAGCA 28626 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 |||| || | || | |||||||||| |||| || || |||||| |||| ||| Sbjct 28627 GACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGGAGTG 28686 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 || ||||| ||||| | |||| ||| ||| || | ||||| || |||||| Sbjct 28687 CGCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGATCGCAACGGCCTCG---ACGATG- 28742 Query 125994 CGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGA----AGAGTTCCAC-GGC 126048 ||| | | || ||| | | || |||| | |||| | | ||| Sbjct 28743 -----ATGCTCTGTACGACAGCCTTTGAGGGCTTGTTCTTCAGGTGAGAGAACAGCAGGC 28797 Query 126049 A----AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 | || || ||| | || ||||| || |||||||| || || ||||| || | Sbjct 28798 ACGCGAAGTCGGTGTGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGAC 28857 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | ||||||||||| |||||||||| |||||| || | ||| || || |||||||||| Sbjct 28858 CAGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAGA 28917 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGC 126196 | || || || ||||| |||| || ||| Sbjct 28918 TACCTTCAACTGCAGCGAAGGCAATCAGTCGC 28949 >seq11 Length=17923 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 173699 AACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAACAA-- 173756 ||||| | || || |||||||| | ||| |||||||| ||||| || |||||| | Sbjct 9988 AACTCGGTCGAGTATATGTTCGTGAGCTTCGCACCGTAACCATTACGACCACCAGTCACT 9929 Query 173757 TTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAATGTAAGTTCTG 173816 ||| |||| || || |||||||| | || | || || ||||| | | ||| | Sbjct 9928 TTCGCTTC--GTCATCGTCGTAGTTCGACGAGGTCAACAGATGTCCAAAAATCATTTCAG 9871 Query 173817 GATTCCAAATACCCTCCTTTTCGTGCAT 173844 || |||||||||||||||| |||||||| Sbjct 9870 GAATCCAAATACCCTCCTTGTCGTGCAT 9843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597338464553160