Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1032 176 4e-39 seq721 158 1e-33 >seq1032 Length=45607 Score = 176 bits (194), Expect = 4e-39 Identities = 357/523 (68%), Gaps = 28/523 (5%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC---CGCC 52385 || ||| | |||| |||||| | |||||| | |||||| ||||||| | | Sbjct 29017 CCTTGCATCCGCAGAAAGGCGGACTGGGCACTCCGATGGATC---AGCGACAAGAGCTCG 28961 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | ||| ||| || | |||||||| ||| || || | || || ||||| | Sbjct 28960 ACCTTCGCCATGCGACTGATTGCCTTCGCTGCAGTTGAAGGTATCTTCTTCTCCGGATCC 28901 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 ||||| ||||||| | | || | | || | ||||| || || |||||| |||| Sbjct 28900 TTTGCATCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCTGGTCTCACGTTCTCCAAC 28841 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT---AC 52559 ||| | || |||||||||||||| ||||||| ||||| |||||||| | || || Sbjct 28840 GAGCTCATCTCGCGCGACGAAGGCATGCACACCGACTTCGCGTGCCTGCTGTTCTCTCAC 28781 Query 52560 AAGACGCGCGTGACCGAAAAATTGGAT-TCGGACACGATCCTGAGCATGTTCAAGGAGGC 52618 || | | | || ||| || | ||| ||| |||||| || ||||| Sbjct 28780 CTGAAGAACAAGCCCTCAAA---GGCTGTCGTACA-------GAGCATCATCGTCGAGGC 28731 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 || || ||||| ||||||| | || | ||| || || || || || |||||||| Sbjct 28730 CGTTGCGATCGAGCAGGAGTTCCTGACAGACGCCCTCCCCTGCGCACTCCTCGGCATGAA 28671 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 ||| || ||||||| ||||||| || |||||||| || |||||| | || |||||| Sbjct 28670 CGCTAAGCTCATGTGCCAGTACATTGAATTTGTGGCCGACCGTCTGCTCCTGGCGCTCGG 28611 Query 52739 GCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 || ||| |||| || |||||| ||| ||||| || || ||| | || || ||||| | Sbjct 28610 -CAACCAGAAGTTCTACAACGCCACCAACCCGTTCGACTTCATGGAGAATATCTCGCTGG 28552 Query 52798 AGGGCAAGACCAA---CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||| ||||||||||| || || || || Sbjct 28551 GTGGCAAGACCAACTTCTTCTTCGAGAAGCGCGTTGGAGACTA 28509 >seq721 Length=104476 Score = 158 bits (174), Expect = 1e-33 Identities = 922/1454 (63%), Gaps = 47/1454 (3%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || || ||||| || | ||| |||| | |||| | |||||| ||| | | Sbjct 61186 GGTTGACTACCTGGAATTCGCCAGCAAGCACACGTCGCGAATAGATATTGCTGGTGTACG 61127 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 |||||||| | ||||| ||| | || || | |||| |||||| ||||| || | Sbjct 61126 GTTCAAAGCACTCGTTGAAGCCCATGATCTGTGAAGTGGATGCGGTAGGCATAGGAGCAA 61067 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 | | |||||| || |||| || ||| | ||| | | ||||||| | | |||||||| Sbjct 61066 CGAGCAAAGAGTTTCGCACACCATGCTCAGCAATCTTGGCCTTCAATGAGTCCCAATCCC 61007 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCC--TCGACTGGCGGG 153265 | || | ||||| || || |||||| |||||||| | | | || | || | | || Sbjct 61006 AAAGATCTGACGGGGTAACGCCCCACATATCGTACTGAAGCTCGCCCTTTGA--GACTGG 60949 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGT-TGGGCCAGTTCGCAGCTAGCCTCGA 153324 | || || | || ||| || || | | |||||| || || || | Sbjct 60948 AGAACCTTCATAGGTCTCGTAAGGACCAA-GCTTCTTGGCCAGATCACAAGAGGCGGTAA 60890 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | || ||| ||| ||||| ||| ||| || | || || | || || || Sbjct 60889 GAGCAGCATGGTAGATGGTCTCGAAGATCTGGATGTTCAGCTCACGAGCCTCGGGCGACT 60830 Query 153385 CGTACGGCATGCGCAGCAGCACA-AAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443 || | ||||| || || |||| ||||| || || ||||| | ||| | |||||| Sbjct 60829 CGAATGGCATACGAAG-AGCAAGGAAGGCATCAGCAAGACCGCTAACACCAAGACCGATG 60771 Query 153444 GGTCGATGCTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGGGATAGTGATTGCGATCGAT 153502 || | || | |||||| | | || || || ||| |||||| ||| ||||| Sbjct 60770 GGCCTGTGGCGCATGTTGCTCTTCTTGGCCTCTGGCACTGG-ATAGTGGTTGACCTCGAT 60712 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 || ||||| || || ||||| | | | | | | || |||| ||| ||| | Sbjct 60711 GATCTTGTTCAGATTCTTGGTGACCACCTGAACAACCTCATGCAGCTTCTGGAAGTCAAA 60652 Query 153563 GGTCATTTCGTCGACGCGTACG-CATCGATT--CACGGCAATAGACGCCAGATTACAGAC 153619 || |||| || | || ||| | || || |||| ||| || ||||| || || Sbjct 60651 CTTC---TCGTTCTCGAGGTCGACATAGGTTGGCAGAGCAAGAGATGCAAGATTGCATAC 60595 Query 153620 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTAT 153679 ||| || || | | |||||| | |||||| | ||| | |||| || || || Sbjct 60594 GGCGACTTCATCAGGTGCAGTGTACTCGATGATCTCTGTGCACAAGTTGGAGCTCTTGAT 60535 Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 || | ||| | ||| ||||| ||||| ||| || || ||| |||| ||| | || Sbjct 60534 CGTTCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAAGG 60475 Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTC--CTGCGCTCGCACC 153797 |||||| ||||| || | ||| | || | || ||| || ||| || ||||| Sbjct 60474 TCCGCCAGTCTCCGTCTGGGCTTCCAGAATGG-CATAC-CAGATCTTCTGAGCACGCACA 60417 Query 153798 CGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCG 153857 || || || || || ||||||| || ||| || ||| || ||||| ||| Sbjct 60416 GTCTCGCGTCCCCGACCTTCTTTCTCGTAGCGAGTGTAAAGCTCCTCGAATTCGTCACCG 60357 Query 153858 TAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCG 153917 || || || || |||||||||| | || |||||||| | ||| |||||| Sbjct 60356 TACACATCAGCAAGACCGGGACACTCGTTGGGGCACATCAGGGTCCAT------TCGGCG 60303 Query 153918 TTG------ACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 || || || |||||||||||| || | ||| || ||| | | |||||||| Sbjct 60302 TTCTGTTCCACACGCTTCATGAACAGATCGGGGATCCACAGGGCGAAGAACAGGTCGCGA 60243 Query 153972 GCCTTGCAATCCTCCGCGCCCATG----TTGCGTTTCAGATTGA-GCACGCTATAGATGT 154026 || | | | || | || || |||||| |||| | | | | || || | Sbjct 60242 GCGC-GAACTTCTTCCTTTCCGTGGTTCTTGCGT---AGATCCATGAAAGAAAT-GACAT 60188 Query 154027 CGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGAT 154083 |||||||||| || || | || | ||| | || || |||||| || || |||| Sbjct 60187 CGGCGTGCCATGGCTCGAGATAAATGGCAAAAGCGCCAGGACGCTTGTTGCCACCTTGAT 60128 Query 154084 CGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGC 154143 |||| | || | | |||||| |||| || | |||||| ||||||| | | |||| Sbjct 60127 CGACATAACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGATGTGC 60068 Query 154144 CGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGC 154203 |||| || | || | | ||| ||| || | || || ||| | || || | Sbjct 60067 CGTTCGTGCCAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCGATAC 60008 Query 154204 CGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGC 154263 | || | | |||||| || |||||| ||| || ||| || || || |||| Sbjct 60007 CACCAGCATTCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCAATGC 59948 Query 154264 TATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCG 154323 | ||||| | | ||| | ||| || ||| || || | |||| || || Sbjct 59947 TGTCGTCTTTCATGTCGATGAGGAAGCAAGAAGCCAACTGGCCGTTCGGCGTACCAGCGC 59888 Query 154324 AAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCTCATCATGCGGTACGTTTCG 154382 || || || || ||||| || || | || || | ||| | ||| || ||| Sbjct 59887 TGAACAGTGTTGGTGATGCGTGTGTGAAGTACTTATTCGA-CATGTAGTTGTATGTCTCG 59829 Query 154383 ATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGC 154442 |||||| | |||||||| || |||||||| |||| || || ||||||| |||||||||| Sbjct 59828 ATGGCGGCCTCGATATCGTCTCCGTGAATTCCGACTGCTACACGCATGATCATGTGCTGC 59769 Query 154443 GGACGTTCGGCGAC 154456 || | |||||||| Sbjct 59768 GGTCTCTCGGCGAC 59755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496249825951440