Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1032 113 4e-20 seq721 82.4 7e-11 >seq1032 Length=45607 Score = 113 bits (124), Expect = 4e-20 Identities = 297/448 (66%), Gaps = 24/448 (5%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202 |||| || ||||| || || || |||||||||| || |||||| | || || | Sbjct 28944 TGATTGCCTTCGCTGCAGTTGAAGGTATCTTCTTCTCCGGATCCTTTGCATCCATCTTCT 28885 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 |||| | || | ||||| || |||||||| ||||||||| |||||| | | Sbjct 28884 GGCTGAAGAAGCGTGGTCTCATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCG 28825 Query 47263 ACGAAGGCCTGCACACCAACTT----TGCCTG----TCTCT-ACTACAACACTAGAGTCG 47313 |||||||| |||||||| |||| |||||| ||||| || || | | || | Sbjct 28824 ACGAAGGCATGCACACCGACTTCGCGTGCCTGCTGTTCTCTCACCTGAAGAACA-AGCCC 28766 Query 47314 ATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGA 47373 ||||| | || ||| | | | ||| || | || ||||| || || ||| Sbjct 28765 -TCAAAGGCTGT-CGTACAGAGCATCATCGTC---------GAGGCCGTTGCGATCGAGC 28717 Query 47374 TGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGA 47433 |||||| | | || || || ||| | | | || |||||||| || | ||| Sbjct 28716 AGGAGTTCCTGACAGACGCCCTCCCCTGCGCACTCCTCGGCATGAACGCTAAGCTCATGT 28657 Query 47434 GAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTT 47493 | ||||||| |||||||| |||||||| |||||| | ||| | | ||| | | Sbjct 28656 GCCAGTACATTGAATTTGTGGCCGACCGTCTGCTCCTGGCGCTCGGCAACCAGAAGTTCT 28597 Query 47494 ACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAA-- 47551 || || || || || ||||| || ||| | || || ||||| | ||||||||||| Sbjct 28596 ACAACGCCACCAACCCGTTCGACTTCATGGAGAATATCTCGCTGGGTGGCAAGACCAACT 28537 Query 47552 -CTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||| |||||||||||||| || || || Sbjct 28536 TCTTCTTCGAGAAGCGCGTTGGAGACTA 28509 >seq721 Length=104476 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| ||||| || ||||| || || || || | | ||| | ||||||||| ||| Sbjct 61186 GGTTGACTACCTGGAATTCGCCAGCAAGCACACGTCGCGAATAGATATTGCTGGTGTACG 61127 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 | || || |||||||| || | ||||| | || | ||||||||||| || | Sbjct 61126 GTTCAAAGCACTCGTTGAAGCCCATGATCTGTGAAGTGGATGCGGTAGGCATAGGAGCAA 61067 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG 146207 | ||||||||||||| ||| || || Sbjct 61066 CGAGCAAAGAGTTTCGCACACCATG 61042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475488751998480