Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq721 120 4e-22 seq1032 96.9 4e-15 seq11 86.0 8e-12 >seq721 Length=104476 Score = 120 bits (132), Expect = 4e-22 Identities = 610/959 (64%), Gaps = 19/959 (2%) Strand=Plus/Minus Query 116332 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 116391 ||||| | | | || ||||| |||||||| |||| | ||||| ||||| | | | Sbjct 60716 TCGATGATCTTGTTCAGATTCTTGGTGACCACCTGAACAACCTCATGCAGCTTCTGGAAG 60657 Query 116392 TCAAAACTGCGAGT-CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 116450 ||||| || | || ||| | |||||| | || || || | || || ||||| || Sbjct 60656 TCAAA-CTTCTCGTTCTCGAGGTCGACATAGGTTGGCAGAGCAAGAGATGCAAGATTGCA 60598 Query 116451 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 116510 || | | ||||| |||||||||| || || || || ||||| || || ||||| Sbjct 60597 TACGGCGACTTCATCAGGTGCAGTGTACTCGATGATCTCTGTGCACAAGTTGGAGCTCTT 60538 Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 || || || | ||||| || || ||| ||| |||||||||||||| || | Sbjct 60537 GATCGTTCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAA 60478 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCA 116629 || || |||||||| |||| | ||||| || | ||| | | || | || ||| Sbjct 60477 AGGTCCGCCAGTCTCCGTCTGGGCTTCCAGAATGGCATACCAGATCTTCTG-AGCACGCA 60419 Query 116630 CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCAC 116689 |||| || | || || || | |||||| ||||| || |||| || || |||| Sbjct 60418 CAGTCTCGCGTCCCCGACCTTCTTTCTCGTAGCGAGTGTAAAGCTCCTCGAATTCGTCAC 60359 Query 116690 C-CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCC 116748 | ||| | || | || || || || | || || | || | ||||| | | Sbjct 60358 CGTACA-CATCAGCAAGACCGGGACACTCGTTGGGGCACATCAGGGTCCATTCGGCGTTC 60300 Query 116749 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAG 116808 | || || ||||||||||| || || |||||||| || || |||| || || ||| | Sbjct 60299 TGTTCCACACGCTTCATGAACAGATCGGGGATCCACAGGGCGAAGAACAGGTCGCGAGCG 60240 Query 116809 CGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGC 116868 ||| ||||||| | || || || || | |||| || |||| ||| |||||| Sbjct 60239 CGAACTTCTTCCTTTCCGTGGTTCTTGCGTAGATCCATGAAAGAAATGACATCGGCGTGC 60180 Query 116869 CACGGTTCCAGGTACACCGCGATTGACCC------CTTGCGACGACCAGCCTGGTTTACA 116922 || || || || || | || | | || |||| ||| | || | ||| Sbjct 60179 CATGGCTCGAGATAAATGGCAAAAGCGCCAGGACGCTTG---TTGCCACCTTGATCGACA 60123 Query 116923 TACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTT 116982 || | || || ||| | || |||||||| ||||| | || | ||| ||| || Sbjct 60122 TAACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGATGTGCCGTTC 60063 Query 116983 GTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCT 117042 || || ||| || | |||| | | | ||| || | ||| ||||| || Sbjct 60062 GTGCCAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCGATACCACCA 60003 Query 117043 GCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCA 117102 || ||||||||| ||||| | || | |||| || || || || ||| Sbjct 60002 GCATTCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCAATGCTGTCG 59943 Query 117103 CCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT-GGTGTACCAGCGTTGAA 117161 | || | ||||||||||||| | || || | | || || ||||||||| |||| Sbjct 59942 TCTTTCATGTCGATGAGGAAGCAAGAAGCCAACTG-GCCGTTCGGCGTACCAGCGCTGAA 59884 Query 117162 GAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGA 117220 || ||||||| ||||| |||| ||| | | ||||| | | ||| ||||| | | Sbjct 59883 CAGTGTTGGTGATGCGTGTGTGAA-GTACTTATTCGACATGTAGTTGTATGTCTCGATGG 59825 Query 117221 CAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 | | || || || |||||||| |||| || || ||||| | ||||| || ||| Sbjct 59824 CGGCCTCGATATCGTCTCCGTGAATTCCGACTGCTACACGCATGATCATGTGCTGCGGT 59766 >seq1032 Length=45607 Score = 96.9 bits (106), Expect = 4e-15 Identities = 301/457 (66%), Gaps = 13/457 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAG---TTTGTCTTCCCATCGAGGCTGATATTCTC 127287 |||||| || || ||||||||||||||| || ||||| ||| | || ||||||||| Sbjct 28508 GTAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCACCCAGCGAGATATTCTC 28567 Query 127288 CATAAAATCAAATGGGTTCTTTGAGTTCCA-AATTGTTGGCACCCCAATCTGTTTGAGGA 127346 ||| || || || ||||| | | ||| | || | ||| || | | ||| | Sbjct 28568 CATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGAG-CGCCAGGAGCA 28626 Query 127347 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 127406 |||| || | || | |||||||||| |||| || || |||||| |||| ||| Sbjct 28627 GACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGGAGTG 28686 Query 127407 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGG 127466 || ||||| ||||| | |||| ||| ||| || | || || || | |||| Sbjct 28687 CGCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGATCGCAACGGCCTCGACGATGATGC 28746 Query 127467 CGTGAATAGTGTCCACCCC--AGGTCTATTGCGTAAAGTCTT-GAAGAGTTC-CACAGCA 127522 || | | | || ||| || | | | | || ||| || ||| || Sbjct 28747 TCTGTAC---GACAGCCTTTGAGGGCTTGTTCTTCAGGTGAGAGAACAGCAGGCAC-GCG 28802 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| | || ||||| || |||||||| || || ||||| ||||| ||| Sbjct 28803 AAGTCGGTGTGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACCAGGC 28862 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||||| |||||| || | ||| || || ||||||||||| || Sbjct 28863 ATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAGATACCT 28922 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || ||||| |||| || ||| ||| |||| Sbjct 28923 TCAACTGCAGCGAAGGCAATCAGTCGCATGGCGAAGG 28959 >seq11 Length=17923 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 177719 AACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAACAA-- 177776 ||||| | ||||| |||||||| | ||| |||||||| ||||| || |||||| | Sbjct 9988 AACTCGGTCGAGTATATGTTCGTGAGCTTCGCACCGTAACCATTACGACCACCAGTCACT 9929 Query 177777 TTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGGTAAGTTCTG 177836 ||| |||| || || |||||||| | || | || || ||||| | | ||| | Sbjct 9928 TTCGCTTC--GTCATCGTCGTAGTTCGACGAGGTCAACAGATGTCCAAAAATCATTTCAG 9871 Query 177837 GATTCCAAATACCCTCCTTTTCGTGCAT 177864 || |||||||||||||||| |||||||| Sbjct 9870 GAATCCAAATACCCTCCTTGTCGTGCAT 9843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613491655261320