Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1032 214 2e-50 seq1917 87.8 2e-12 >seq1032 Length=45607 Score = 214 bits (236), Expect = 2e-50 Identities = 531/794 (67%), Gaps = 19/794 (2%) Strand=Plus/Plus Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAG 132722 ||| || || || ||||||| | ||||||| ||| | |||||| | | | ||| Sbjct 28568 CATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGAGCG---CCAGGAG 28624 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCA 132781 ||| | ||||||||| || || ||||| || ||||| | || || | | | || || | Sbjct 28625 CAGACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGTTCATG-CCGAGGA 28683 Query 132782 GA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 | |||| || || || || || || || |||||||| || || || ||| || | Sbjct 28684 GTGCGCAGGGG-AGGGCGTCTGTCAGGAACTCCTGCTCGATCGCAACGGCCTCGACGATG 28742 Query 132841 ATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCA 132900 || | ||| ||| ||| | | || || ||||| || ||| || Sbjct 28743 ATGCTCTGTACGACAGCCTTTGAGGGCTTGTTCTTCAGGTGAGAGAACAGCAGGCACGCG 28802 Query 132901 AAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGC 132960 |||||| |||| ||| ||||| | || ||||| |||||| ||| || | || ||| Sbjct 28803 AAGTCGGTGTGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACCAGGC 28862 Query 132961 ATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCC 133020 ||||| || || || || ||||| || |||| || || || || ||||||| || Sbjct 28863 ATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAGATACCT 28922 Query 133021 TCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAG 133080 || || || ||||| || | ||| ||| | |||| || | ||| | |||||| Sbjct 28923 TCAACTGCAGCGAAGGCAATCAGTCGCATGGCGAAGGTCGAGCTCTTGTCGCTGATCCAT 28982 Query 133081 CGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 || || ||||| || |||||| || ||| || || | ||||||||||| |||| Sbjct 28983 CGGAGTGCCCAGTCCGCCTTTCTGCGGATGCAAGGGATATTGTCGATGGCGTTGAACAG- 29041 Query 133141 CGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCG 133198 | | ||| | || ||| | ||| |||||||||||| || || | |||| Sbjct 29042 -GTATGTTCGTTGTTTGGGCTCGCTAATGTATGTGTCGATGAGGAGGGAGTATGTCTCCG 29100 Query 133199 AGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCA 133258 |||| | ||||||||| ||| || || || || ||||| || || ||| || || Sbjct 29101 AGTGGATGTTCTCCATCATGATCTGGAATCCATAGAAGCATCGTGCTTCGGGTACTGTCA 29160 Query 133259 CTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAA 133317 |||| | || ||| || || ||||| || |||||||||||||| || |||||||| Sbjct 29161 CTTC-GGCGCTGAAGCGTTCCACCAGGTTCTCGTTGACGATGCCATCTGATGCGGCGAAG 29219 Query 133318 AAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGTCG 133374 || || || || || |||||| ||||||| |||| | | |||| | |||||| Sbjct 29220 AATGCAAGAACATGTGAGATGAAGAAACGCTCGTCGTCGGTGAGGCGCTTGTTCCAGTCA 29279 Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 || ||||| || || || | ||||||| | ||||| || || || ||||| || ||| Sbjct 29280 TGCAGATCCTTTGATAGATCAATCTCCTCGGCAGTCCAGAATGATGCTTCGGCCTTCTTG 29339 Query 133435 TACATACTCCACAT 133448 ||||| |||| || Sbjct 29340 TACATGTTCCATAT 29353 >seq1917 Length=9250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||| || | ||||| ||||| || |||| ||| ||||| ||| |||| Sbjct 9081 GACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTGATTTTCGCAGGCAAGCAGTTGGAA 9022 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 || | || || | ||||||||||| || ||||| ||| || ||||| |||||| | Sbjct 9021 GATGGTCGTACTTTGTCAGACTACAACATTCAGAAGGAGAGC-ACTCTGCACTTGGTGTT 8963 Query 38456 GCGTTTGAGAGGCGG 38470 ||||||| | || || Sbjct 8962 GCGTTTGCGTGGTGG 8948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160126871680