Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq644 95.1 1e-14 >seq644 Length=73069 Score = 95.1 bits (104), Expect = 1e-14 Identities = 175/254 (69%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 159548 TTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATA-TGT 159606 ||||| | || |||||||| || || || || ||| | | ||| | ||| ||| Sbjct 12049 TTATGGTGACCTATCCATCCACGTTCGGAGTGTTCGAACCCGAGGTCA-AGAGAGCGTGT 12107 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 ||||||| || || | |||||||| || || | || || || || | || ||||| Sbjct 12108 GAGATTGTGCACAAGCACGGTGGTCAAGTTTACATGGACGGCGCCAACATGAACGCACAA 12167 Query 159667 GTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAG 159726 | ||||| || | || |||||| ||||| || ||||| ||| | || ||| Sbjct 12168 ATTGGTCTTTGCTCGCCGGGCGAGATTGGTGCTGATGTGTGCCATCTCAACCTCCACAAG 12227 Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAA 159786 |||||||||||||| || ||||| || |||||||| || || || || || || || | Sbjct 12228 ACATTCTGTATTCCTCACGGAGGAGGTGGTCCTGGAGTGGGACCCATCGGCGTTGCTGAG 12287 Query 159787 CATCTCACACCATT 159800 || ||| | ||||| Sbjct 12288 CACCTCGCTCCATT 12301 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/170 (71%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 157935 TCTTG-AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 157993 ||||| ||||||| |||||||| ||||| ||||| || ||||||| ||||| Sbjct 10375 TCTTGGAGAATCCAGCCTGGTACACCAGCTACACGCCCTACCAGCCTGAGATCAGTCAGG 10434 Query 157994 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA 158053 || ||||||| | | | || | ||| || | | || || ||||||||||| | | Sbjct 10435 GACGATTGGAGTCGCTGCTGAACTTCCAGACCATGGTGACGGATCTCACAGGACTCGCAA 10494 Query 158054 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | || || || || || | |||||||| ||||| |||||||| || ||| Sbjct 10495 TCGCCAATGCGTCCCTCCTCGATGAAGCTACTGCTGCAGCAGAGGCTATG 10544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588036300252720