Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1917 134 3e-26 seq1019 89.7 1e-12 >seq1917 Length=9250 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| |||||| ||| || ||||| ||||| || | | ||| | ||||| Sbjct 8962 CAACACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCTGACAAAGTACGACCATC 9021 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | |||||| |||||||| || || || || ||||| || || || || || ||||| Sbjct 9022 TTCCAACTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 9081 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||| || || || || ||||| || ||||||||| || |||| ||| Sbjct 9082 TTGAATCTTGCTCTTCACATTGTCGATCGTGTCTGAGGATTCCACTTCTAGCGTAATCGT 9141 Query 195108 CTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||| | || || ||||| Sbjct 9142 CTTTCCTGTGAGTGTCTTGACGAA 9165 >seq1019 Length=44428 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/184 (70%), Gaps = 15/184 (8%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| ||||||||||| || ||||| ||||| || | || || | || || |||||| Sbjct 44428 AGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGACCGTCCTCGAGC 44369 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || ||||| | || || ||||| ||||||||||| || || Sbjct 44368 TGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCCTC-------CGA--- 44319 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||||||||| ||||| || || ||| || || || ||||| | ||||| || Sbjct 44318 -----CTTGACGTTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCG 44264 Query 195115 GTCA 195118 |||| Sbjct 44263 GTCA 44260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109452785722709