Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1032 219 8e-52 >seq1032 Length=45607 Score = 219 bits (242), Expect = 8e-52 Identities = 566/854 (66%), Gaps = 15/854 (2%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAG---TTTGTCTTCCCCTCCAACGAGATGTTC 47896 |||||||| || || | ||||| |||||| || ||||| || ||| |||||| ||| Sbjct 28506 TGGTAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCACCCAGCGAGATATTC 28565 Query 47897 TCCATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCA 47954 ||||||||| ||| ||||||| | ||| || | | | || ||| | | | Sbjct 28566 TCCATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTT--GCCGAGCGCCAGGA 28623 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 |||| | || || || | || ||||| | ||||||| | ||||||||| | || Sbjct 28624 GCAGACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCGAGGA 28683 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | | ||| | || | ||| || ||||||| ||| ||| ||||| || | | | Sbjct 28684 GTGCGCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGATCGCAACGGCCTCGACGATGA 28743 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | || ||| | || |||||| ||||| |||||| | | |||| ||| | Sbjct 28744 TGCTCTGTACGACAGCCTTTGAGGGCTTGTTCTTCAGGTGAGAGA---ACAGCAGGCACG 28800 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||||| ||||||||| || ||||||| |||||||||| |||||||| Sbjct 28801 CGAAGTCGGTGTGCATGCCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACCAG 28860 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || || |||||||| || | || || || || ||||||||||| | Sbjct 28861 GCATGAGACCACGCTTCTTCAGCCAGAAGATGGATGCAAAGGATCCGGAGAAGAAGATAC 28920 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 | || ||||| ||||| || | || | | |||| | | | ||||||| ||||| Sbjct 28921 CTTCAACTGCAGCGAAGGCAATCAGTCGCATGGCGAAGGTCGAGCTCTTGTCGCTGATCC 28980 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | || |||||||| ||||| | |||||| || || | || ||||| ||| | Sbjct 28981 ATCGGAGTGCCCAGTCCGCCTTTCTGCGGATGCAAGGGATATTGTCGATGGCGTTGAACA 29040 Query 48375 GCTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | | | | || | ||| || || || || || | ||| |||| Sbjct 29041 GGTATGTTC-GTTGTTTGGGCTCGCTAATGTATGTGTCGATGAGGAGGGAGTATGTCTCC 29099 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || ||||||||| || |||||| | || || || | Sbjct 29100 GAGTGGATGTTCTCCATCATGATCTGGAATCCATAGAAGCATCGTGCTTCGGGTACTGTC 29159 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 ||||| | | ||| | |||| ||| ||||| ||||| || |||||||| || || ||| Sbjct 29160 ACTTCGGCGCTGAAGCGTTCCACCAGGTTCTCGTTGACGATGCCATCTGATGCGGCGAAG 29219 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA-GAGC--ATTCCAGCCC 48610 || ||||| |||||| | ||| ||||||| || ||||| | || |||||| | Sbjct 29220 AATGCAAGAACATGTGAGATGAAGAAACGCTCGTCGTCGGTGAGGCGCTTGTTCCAGTCA 29279 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 || | || || || || | || || |||||||||| || || || || ||| Sbjct 29280 TGCAGATCCTTTGATAGATCAATCTCCTCGGCAGTCCAGAATGATGCTTCGGCCTTCTTG 29339 Query 48671 TACATGCCCCATAT 48684 |||||| |||||| Sbjct 29340 TACATGTTCCATAT 29353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931509197287680