Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq644 82.4 9e-11 >seq644 Length=73069 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/170 (71%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||||||||| ||||| |||||||| | || || || || || |||| | ||| Sbjct 10544 CATAGCCTCTGCTGCAGCAGTAGCTTCATCGAGGAGGGACGCATTGGCGATTGCGAGTCC 10485 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| || || || | | || ||| | || | | | ||||||| ||||||| || Sbjct 10484 TGTGAGATCCGTCACCATGGTCTGGAAGTTCAGCAGCGACTCCAATCGTCCCTGACTGAT 10425 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCT-CAAGA 140027 ||||| || ||||| ||||| |||||||| ||||||| ||||| Sbjct 10424 CTCAGGCTGGTAGGGCGTGTAGCTGGTGTACCAGGCTGGATTCTCCAAGA 10375 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 ||||| | ||| || | || || || || || || || |||||||| || ||||| || Sbjct 12301 AATGGAGCGAGGTGCTCAGCAACGCCGATGGGTCCCACTCCAGGACCACCTCCTCCGTGA 12242 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||||||||| || | || ||||| || ||||| |||||| Sbjct 12241 GGAATACAGAATGTCTTGTGGAGGTTGAGATGGCACACATCAGCACCA 12194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578983729628040