Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1612 161 1e-34 seq1917 122 1e-22 seq721 113 6e-20 seq537 100 4e-16 seq465 96.9 5e-15 >seq1612 Length=7758 Score = 161 bits (178), Expect = 1e-34 Identities = 395/595 (66%), Gaps = 9/595 (2%) Strand=Plus/Plus Query 196056 CTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTA 196115 || |||| || || || ||| | ||||| || || | ||||| || || ||||| || Sbjct 127 CTCGGGCCCTCCGACGTCTTCGTACTGCTTGCGAGAGAGCCAAGCGCACGCTCTCCTCGT 186 Query 196116 CGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTA 196175 | ||||| || | ||||||||||| ||| || || ||||||||||| || | | Sbjct 187 CTGCTCAGACCTCCATCGAGATTGATTCACTGTACGAGGGCATTGACTTCTACACTTCGA 246 Query 196176 TTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTG 196235 | || ||||| ||||| || ||| | | ||| | || | |||||| || | Sbjct 247 TCACTCGTGCCCGTTTCGAGGAGCTTTGCCAGGATCTCTTCCGCTCTACTATGGAGCCAG 306 Query 196236 TTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTG 196295 | || | || || || || ||||| || |||||| || | || ||||| || | Sbjct 307 TCGAGCGCACTCTCCGCGATGCGAAGATCGACAAGTCTTCTGTGCACGAGATTGTGCTCG 366 Query 196296 TGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATA 196355 | || || || || ||||| || ||||| || ||||| | || ||| ||||| | Sbjct 367 TTGGTGGGTCCACTCGTATCCCCAAGATCCAGAAGATGGTCTCCGACTTTTTCAACGGCA 426 Query 196356 AAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGG 196415 | || |||| | |||||||| || || || || || || ||||| ||||| || | Sbjct 427 AGGAGCCAAACCGCTCCATCAACCCAGACGAGGCCGTCGCCTACGGTGCCGCCGTCCAAG 486 Query 196416 CTGCTATTCTCTCAGGTGTTGACAATAATAAC--GTC---CAA-GATCTTCTGCTACTTG 196469 | || || || || |||| ||| | || | ||| ||| || | || || || | Sbjct 487 CCGCCATCCTGTCCGGTG---ACACTTCTAGCAAGTCTACCAACGAGATCCTCCTGCTCG 543 Query 196470 ATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTG 196529 | || || || | ||||| || | ||||| || || || || ||||| | || Sbjct 544 ACGTCGCCCCGCTGTCCCTTGGCATCGAAACTGCCGGCGGAGTCATGACCCCTCTCATCA 603 Query 196530 ATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATC 196589 | | ||||| || || || ||||||||| | ||||| || || | |||| || | Sbjct 604 AACGCAACACCACCATCCCAACTAAGAAGTCTGAGGTCTTCTCCACCTTCGCCGACAACC 663 Query 196590 AACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAA 196644 |||| ||||||| || || ||||| ||||||||||| || || | || ||||| Sbjct 664 AACCTGGTGTTCTCATCCAGGTATACGAAGGAGAACGATCTCGGACCAAAGATAA 718 Score = 111 bits (122), Expect = 2e-19 Identities = 178/256 (70%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711 || |||| || || | || || || ||| |||| || | ||||| ||||||||| | Sbjct 785 CTCGGAAAATTTGAGCTCACTGGTATCCCACCTGCGCCTCGCGGTGTCCCACAGATTGAG 844 Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771 || ||||| || |||||||| || || | ||||| | ||| || |||| | Sbjct 845 GTCACTTTCGACATTGACGCAAACGGTATCATGAACGTTTCCGCTCTCGAGAAGGGCACC 904 Query 196772 GGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATT 196831 ||||| | | ||||| ||||||||||| ||||| || || | || |||||||| ||| Sbjct 905 GGCAAGACCAACAAGATCGTGATTACCAACGACAAAGGCCGCTTGTCCAAGGAGGAGATT 964 Query 196832 GAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGGTATATGAGAAACAG 196891 || || ||| | || || || ||||||| ||| ||||| |||| | | | ||| | | Sbjct 965 GAGCGCATGTTGGCTGAAGCCGAGAAGTACAAGGACGAAGATGAGGCAGAAGCGAACCGG 1024 Query 196892 ATGAAAGCTATAAATG 196907 || |||| | |||| Sbjct 1025 ATTCAAGCGAAGAATG 1040 >seq1917 Length=9250 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 || || || || || || ||||| || || || || || || || || |||||||| ||| Sbjct 9165 TTCGTCAAGACACTCACAGGAAAGACGATTACGCTAGAAGTGGAATCCTCAGACACGATC 9106 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || || | || |||||||||||| ||||| || || ||||| || ||||| || || Sbjct 9105 GACAATGTGAAGAGCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTG 9046 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050 ||||| || || || ||| | |||||||| ||||| | | || |||||| |||| ||| Sbjct 9045 ATTTTCGCAGGCAAGCAGTTGGAAGATGGTCGTACTTTGTCAGACTACAACATTCAGAAG 8986 Query 172051 GAGTCTACTCTACAC 172065 ||| ||||| ||| Sbjct 8985 GAGAGCACTCTGCAC 8971 >seq721 Length=104476 Score = 113 bits (124), Expect = 6e-20 Identities = 580/912 (64%), Gaps = 25/912 (3%) Strand=Plus/Plus Query 77927 ATGGATGGAAAGCTCATGGAGACACCTCAATACTTATTCATGCGTGTTTCTATTGGTATT 77986 || ||||| ||| || |||| ||| || || | |||||||||| | | || ||| Sbjct 59743 ATCGATGGCAAGGTCGCCGAGAGACCGCAGCACATGATCATGCGTGTAGCAGTCGGAATT 59802 Query 77987 CATGGAAATGATATTCCAGCGGTACTTGAAACGTATGATAAAATGTCCAATG-GTATGTT 78045 || ||| | ||||| || | | || || || | | ||||| ||| ||| || Sbjct 59803 CACGGAGACGATATCGAGGCCGCCATCGAGACATACAACTACATGTCGAATAAGTAC-TT 59861 Query 78046 TATTCACGCAACACCTACTTTGTTTAATGCAGGTACTCCC--CGTCCACAGATGTCATCT 78103 | |||||| |||| || |||| | || ||||| || || ||| | || | ||| Sbjct 59862 CACACACGCATCACCAACACTGTTCAGCGCTGGTACGCCGAACGGCCA--GTTGGCTTCT 59919 Query 78104 TGTTTCCTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGAG 78163 || ||||| | | | || || ||| ||| | || || |||| || || | | Sbjct 59920 TGCTTCCTCATCGACATGAAAGACGACAGCATTGAGGGAATTTACGATACACTGAAAATT 59979 Query 78164 TGTGCTCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCA 78223 || ||| ||| || ||| ||||||||||| ||||| | |||| | ||||||| Sbjct 59980 TGCGCTATGATCTCAAAGAATGCTGGTGGTATCGGTCTCAACTGTCACAAAATTCGTGCC 60039 Query 78224 AACAAGTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGG 78283 | | ||| ||| || || || || || | || | ||||| |||||| | Sbjct 60040 ACCGGATCCTACATTGCTGGCACGAACGGCACATCCAACGGCCTGATTCCCATGCTTCGT 60099 Query 78284 GTATTCAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAG------GGGTCA 78337 || | ||| ||||| || |||||| | ||| ||| | | ||| || | Sbjct 60100 GTCTACAACAACACAGCTCGTTATGTCGATCAA---GGTGGCAACAAGCGTCCTGGCGCT 60156 Query 78338 TTCGCTATGTACCTTGAACCTTGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTC 78397 || || || || || || || |||||||||||||| || ||| |||| || || Sbjct 60157 TTTGCCATTTATCTCGAGCCATGGCACGCCGATGTCATTTCTTTCATGGATCTACGCAAG 60216 Query 78398 AACCAGGGTGACGAGGAAGCTCGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGAT 78457 ||||| || | || |||| ||| | || | ||| || ||||||| || ||| Sbjct 60217 AACCACGGAAAGGAAGAAGTTCGCGCTCGCGACCTGTTCTTCGCCCTGTGGATCCCCGAT 60276 Query 78458 CTTTTTATGAAGAGAGTTGA--GGAAGGAGGTAAATGGTCTCTTTTCTGTCCAGATAAGA 78515 || || |||||| | || || ||| | | ||||| | || | || || | || Sbjct 60277 CTGTTCATGAAGCGTGTGGAACAGAACGCCG--AATGGACCCTGATGTGCCCCAACGAGT 60334 Query 78516 CTAAGGGTCTTTCAGATGTATACGGGGAAGAATTCGAAAAATTGTACACTAAATACGAAG 78575 | |||||| | ||||| ||||| || |||||||| | | |||||| ||||| Sbjct 60335 GTCCCGGTCTTGCTGATGTGTACGGTGACGAATTCGAGGAGCTTTACACTCGCTACGAGA 60394 Query 78576 AGGAAGGTCTCGCTATTAAGACAATTGATGCATCTGAA-CTATGGAAAGCTATTATCAAA 78634 | ||||||| | |||| | ||| || ||| | ||| | || ||| | || Sbjct 60395 AAGAAGGTCGGGGACGCGAGACTGTGCGTGC-TCAGAAGATCTGGTATGCCATTCTGGAA 60453 Query 78635 AGTCAAACAGAGACCGGCACCCCGTATATGCTATACAAAGACAGCTG-TAACAGAAAGTC 78693 || || ||||| ||| || | || || ||||| || |||| ||| | ||| Sbjct 60454 GCCCAGACGGAGACTGGCGGACCTTTCATCCTCTACAAGGA-TGCTGCCAACCGCAAGAG 60512 Query 78694 TAACCAAAAGAACCTAGGTGTCATCAAAAGCTCTAACCTTTGCACAGAAATTCTGGAATA 78753 ||||| ||||| || || ||||| ||||| ||| | |||||||| || | || || Sbjct 60513 CAACCAGAAGAATCTCGGAACGATCAAGAGCTCCAACTTGTGCACAGAGATCATCGAGTA 60572 Query 78754 CACGGATAAGAATGAAACAGCTGTATGTAATCTAGGGTCTATCGCTCTACCAAAGTTTGT 78813 ||| | ||||| || ||||| ||||| | ||| | ||||| |||| | ||| Sbjct 60573 CACTGCACCTGATGAAGTCGCCGTATGCAATCTTGCATCTCTTGCTCTGCCAACCTATGT 60632 Query 78814 TGA--TCGAGAA 78823 || ||||||| Sbjct 60633 CGACCTCGAGAA 60644 >seq537 Length=37262 Score = 100 bits (110), Expect = 4e-16 Identities = 272/406 (67%), Gaps = 23/406 (6%) Strand=Plus/Plus Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608 ||||| ||||||||| | | | || | || || |||||||| || || || || Sbjct 22433 ATCCCTCGTGGTGCTATCTTGTCAGGACCTCCCGGAACTGGTAAGACGCTCCTCGCCAAG 22492 Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCC--GCGGCGAGTTTCATCG 198666 |||| || || || |||| || ||||||| | | | || || ||| | | Sbjct 22493 GCTACAGCAGGCGAGAGTGGTGTGCC-TTTCTTCTCCGTTTCTGGCTCTGAATTTG-TGG 22550 Query 198667 AGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAA 198726 | ||||| |||||||||||| | | || || || || ||||||| | || || ||| Sbjct 22551 AAATGTTTGTTGGTGTTGGTCCAAGTCGTGTACGAGATCTCTTTGCCAATGCTCGCAAAA 22610 Query 198727 ATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGT-GGA 198785 | || |||||||||||||| ||||||||||| || |||| || |||| | || Sbjct 22611 ACACGCCTTGTATCATCTTCATCGATGAGATTGATGCCATTGGAAAAGCTCGTGCTAAGA 22670 Query 198786 ACTACTACACCTGGT------AATGATGAGCGTG--AGCAGACGATTAACCAGCTTCTCA 198837 ||| || |||| ||||| ||||||| |||| || | |||||| | || | Sbjct 22671 ACTCCT----TTGGTGGCGGCAATGACGAGCGTGAAAGCACAC--TCAACCAGATCCTGA 22724 Query 198838 CTGAGATGGATGGTTTTGACA-ATGAG-ACTGGTATCGTGGTGATTGCTGCTACAAATAG 198895 | || ||||| || || ||| | || || | |||||||| |||||| ||| || || Sbjct 22725 CAGAAATGGACGGATTCAACACGTCAGAACAAG--TCGTGGTGCTTGCTGGTACGAACAG 22782 Query 198896 GATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGAC 198941 ||| |||| ||| | |||||| | || || || || || ||| Sbjct 22783 AGCAGATGTCCTTGATAAGGCACTGATGCGACCGGGACGTTTTGAC 22828 >seq465 Length=166670 Score = 96.9 bits (106), Expect = 5e-15 Identities = 175/254 (69%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGT-ATGGCAAAATGATCGT-- 195358 |||||||||||| | ||||| || ||||| ||||| ||| | ||| || | | | Sbjct 114354 ATTGGTATCGATCTCGGAACAACATACTCCTGTGTGGGTATCATG----AAGGGTGGAAA 114409 Query 195359 -GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 || || || | || |||||||| ||||| | ||| || |||| || || | | Sbjct 114410 CGTCGAAATCCTGGTCAACGACCAAGGTAACCGAATAACACCTTCGTGGGTGGCTTGGAA 114469 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||| |||| ||||| || |||||||||||||| || ||| || ||| || || Sbjct 114470 CGATGATGAGCGTCTTGTCGGAGATGCCGCAAAGAACCAGTTCGCGGCGAATCCACACAG 114529 Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGA 195537 ||||||| ||| ||||| || ||||||||||||||| || || | || || | Sbjct 114530 AACTGTCTACGACATCAAGCGCCTGATTGGTCGCAAGTTTGACGACAAAGACGTTCAGAA 114589 Query 195538 CGATATAAAGGACT 195551 ||||| ||| ||| Sbjct 114590 GGATATGAAGCACT 114603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657845731411440