Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq648 118 3e-21 seq1087 107 6e-18 seq537 93.3 1e-13 >seq648 Length=88251 Score = 118 bits (130), Expect = 3e-21 Identities = 119/152 (78%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || |||||||| ||||||||||| || || || |||||||| ||||||||| | || Sbjct 36295 TGAGCAATAGTCATTCGACTGGGAATGGCGTGTGGGTTGATGATAATGTCGGGTGTGAGG 36354 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCC--TCAATA-ATGTTTCCAATAGTTCCCTTT 251955 ||||| ||| | || |||||||| |||| || || || | ||||| || |||||| Sbjct 36355 CCATCGGCACTAAAAGGCATATC---TTCCTGTCTGTAGGTGATACCAATGGTGCCCTTT 36411 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||||| ||| || |||||||| Sbjct 36412 TGTCCGTGACGAGAGGCGAATTTGTCACCAAT 36443 Score = 98.7 bits (108), Expect = 3e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 ||||| ||| | || || || ||||| || || ||||| |||| || || || Sbjct 35887 TGGACTCTGAAGGCGTCGGAAACGTCAAGGAGACGCTCCTTGAGGAAGGCGGAGGCGCCA 35946 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 || | |||||||||||| || ||||| || ||||| || ||||||||||| | || | | Sbjct 35947 TGCGCAATCATACAATCGCGATCCATCTCTCCGAAGCGCAGACCACCATCTCTGGCACGA 36006 Query 251551 CCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTA 251610 || || ||||||| |||||||| | | ||| ||| | || ||| ||| Sbjct 36007 CCTTCCACAGGCTGGCGAGTGAGGATTTGTAGAGGCCCGCGTGCTCGAGCATGAATCTTG 36066 Query 251611 TCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 || | |||||||| || ||||||||| ||| |||||| | ||||| Sbjct 36067 TCGTCGACCATATGGCGAAGGCGCTGGTAGTATGTGGGACCAAGGAAGA 36115 >seq1087 Length=225685 Score = 107 bits (118), Expect = 6e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 302563 ATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTT 302622 |||||||| || || | ||||| | |||||||||||| || |||||| | || Sbjct 19518 ATCATAATCTCCTCGAGTGCCTTGACCAGACGACGCTGAATGTATCCAGTTTCCGCAGTC 19577 Query 302623 TTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCC 302682 || ||||| ||||| || | ||| |||||||||||||||| |||||||| | ||||| | Sbjct 19578 TTGACAGCAGTATCGATCAAACCTTCACGACCACCCATAGCGTGGAAGAAGAACTCTTGC 19637 Query 302683 GGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742 || || || | | |||| |||| |||||||| | || ||||||| | ||| Sbjct 19638 GGAGTGAGGCCTCGCAGGTAGGAATTCTCGACGAAACCTCTCGATGCGGGCGAGTAGTCA 19697 Query 302743 AACTTGGTAAAGTGTGGCA 302761 ||| | |||||| |||| Sbjct 19698 TCCTTTGGAAAGTGCGGCA 19716 >seq537 Length=37262 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 ||| |||| |||||||| || || ||||| || | ||| || | |||| | ||| | Sbjct 22657 TTTTCCAATGGCATCAATCTCATCGATGAAGATGATACAAGGCGTGTTTTTGCGAGCATT 22598 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||| | |||| |||||| || |||| ||||||| ||||||| ||||||||||| Sbjct 22597 GGCAAAGAGATCTCGTACACGACTTGGACCAACACCAACAAACATTTCCACAAATTCAGA 22538 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || || | ||| | ||| ||||||||| ||| | || || || || Sbjct 22537 GCCAGAAACGGAGAAGAAAGGCACACCACTCTCGCCTGCTGTAGCCTTGGCGAGGAGCGT 22478 Query 289206 CTTACCTGTTCCAGGTGGTCC 289226 |||||| ||||| || ||||| Sbjct 22477 CTTACCAGTTCCGGGAGGTCC 22457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471779375517099