Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1032 165 1e-34 seq681 131 2e-24 seq721 104 3e-16 seq1704 87.8 2e-11 seq675 86.0 8e-11 >seq1032 Length=45607 Score = 165 bits (182), Expect = 1e-34 Identities = 229/319 (72%), Gaps = 9/319 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAG---TTGGTCTTGCCCTCGAGCGAG 868747 ||||| ||| || || |||||| |||||| ||| ||||||||||| | |||||| Sbjct 28500 GCCTTTTGGTAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCACCCAGCGAG 28559 Query 868748 ATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGAC 868807 || |||||| | ||||||||||| | |||||| ||| | | ||||||| | Sbjct 28560 ATATTCTCCATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGAGCGCC 28619 Query 868808 GCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCG 868867 |||||| |||||||| ||||| || ||||||||||||||||| |||||||||||| Sbjct 28620 AGGAGCAGACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCG 28679 Query 868868 ATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG 868927 | ||| || || || | || ||| ||||| | ||||||| | |||||||||||| Sbjct 28680 AGGAGTGCGCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGATCGCAACGGCCTCGACG 28739 Query 868928 ATGATCTGCCTGGGCACGTCGGCC---GAGGGCTTGTTGACGAGCATCGTGTAGAGCAGG 868984 ||||| || | ||| | ||| ||||||||||| || | | | |||||| Sbjct 28740 ATGAT---GCTCTGTACGACAGCCTTTGAGGGCTTGTTCTTCAGGTGAGAGAACAGCAGG 28796 Query 868985 CAGGCAAAGTCGCAGTGCA 869003 || || |||||| ||||| Sbjct 28797 CACGCGAAGTCGGTGTGCA 28815 Score = 95.1 bits (104), Expect = 1e-13 Identities = 198/288 (69%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||| | |||||| || | ||| || |||||||| || |||||| Sbjct 28818 CCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACCAGGCATGAGACCACGCTTC 28877 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || ||||| ||||||| ||| || || ||||| ||||| || || || || || || Sbjct 28878 TTCAGCCAGAAGATGGATGCA-AAGGATCCGGAGAAGAAGATACCTTCAACTGCAGCGAA 28936 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | || || ||| ||| ||| ||||| || || | | ||||||| | ||||| Sbjct 28937 GGCAATCAGTCGCATGGCGAAG--GTCGA-GCTCTTGTCGCTGATCCATCGGAGTGCCCA 28993 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG--TGGTCCTTT 869416 ||| |||||| | | | | || | ||||||||||| || ||| || || || Sbjct 28994 GTCCGCCTTTCTGCGGATGCAAGGGATATTGTCGATGGCGTTGAACAGGTATGTTCGTTG 29053 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | | || || | | || |||||||| ||||| || || |||||| Sbjct 29054 TTTG--GGCTCGCTAATGTATGTGTCGATGAGGAGGGAGTATGTCTCC 29099 >seq681 Length=141706 Score = 131 bits (144), Expect = 2e-24 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | ||||| |||||||||||| | ||||||||| | || || || | || Sbjct 48962 CTCTTCGAGATCATCCTTGCCGCCAACTACATGGACATCAAGGCCCTTCTTGACGTGGGC 48903 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| |||| || ||||||||||||||||||||||| || |||||||||||||| || Sbjct 48902 TGCAAGACTGTTGCGAACATGATCAAGGGCAAGTCGCCGGAAGAGATCCGCAAGACATTC 48843 Query 1592288 AACAT 1592292 ||||| Sbjct 48842 AACAT 48838 >seq721 Length=104476 Score = 104 bits (114), Expect = 3e-16 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||| || || || |||| ||| |||| || |||||||| | ||||||||||| Sbjct 60131 TGATCGACATAACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGAT 60072 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||| ||||| || | ||||| |||| ||| || | ||||| | | ||| Sbjct 60071 GTGCCGTTCGTGCCAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCG 60012 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || || ||| ||||| | ||||| ||| || || ||||| || ||||| Sbjct 60011 ATACCACCAGCATTCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCA 59952 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280 || |||| | |||||||| | ||| ||||| || Sbjct 59951 ATGCTGTCGTCTTTCATGTCGATGAGGAAGCAAGA 59917 >seq1704 Length=66733 Score = 87.8 bits (96), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || ||||| ||| |||||| ||||| | || ||||| ||||||| || Sbjct 56871 GCTTGGCAAGCTCGCCAGGCAGGATCAGTCGCACAGATGTTTGGATTTCGCGCGATGAGA 56930 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGC-GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 |||| |||||| | ||| || || | ||||| || ||| ||| |||| Sbjct 56931 TCGTAGACTTCTTGTTGTA-TGCAGCGAGCTTGGATGCCTCTGTTGCGACGCGCTCGAAG 56989 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||| || || ||||| | || |||||| | ||||||||| || ||| ||| Sbjct 56990 ATGTCGTTCACGAAAGAGTTGAGGATCGACATGGCGCGGTTGGAGATACCAGTGTCTGGG 57049 Query 1254522 TGCACCTGCTTGAGCAC 1254538 || ||||||||||| || Sbjct 57050 TGGACCTGCTTGAGGAC 57066 >seq675 Length=45818 Score = 86.0 bits (94), Expect = 8e-11 Identities = 183/264 (69%), Gaps = 11/264 (4%) Strand=Plus/Minus Query 733054 TCAAGATCGTGACGCGCGCCATGCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCC 733113 |||| ||| |||||| | ||| | || || | |||||||| | |||||||||| Sbjct 13578 TCAAAATCCAAACGCGCCAAACGCGGCGTCCAGAAATCGGCGACAAGTTTTCGTCGCGCC 13519 Query 733114 ACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCGAG--GACATGCCCTGGTCGCC 733171 |||||||||| || ||| || | | ||| | | | || |||||||||| ||| Sbjct 13518 ACGGCCAAAAAGGTGTCGTAGGTCTCCT-CGC-CGAACAAGCAGACATGCCCTTTTCGGA 13461 Query 733172 GCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGAC 733231 | |||| || | |||||||| | || ||||| |||| |||| || |||||||| Sbjct 13460 CCAAGGCGTCGTC---CCCGACATTATCATGAACCCACACGGTTTCCCCTCCCGCATGAC 13404 Query 733232 CATGGGCAAGATGCTCGAGGCCCTC-CTGGGCAAGGTGGCCTGC-CGCGAGGGCTACATC 733289 | ||||| ||||||||| | || |||| ||| ||| ||| |||| || ||| Sbjct 13403 GGTCGGCAAAATGCTCGAGCTCGTCTCTGGAAAAGCAGGCGTGCTCGCG-GGCAGACA-A 13346 Query 733290 GGCGACGGCACGCCCTTTGGCGGC 733313 | |||| || |||||||||||| Sbjct 13345 GAATACGGAACCCCCTTTGGCGGC 13322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106972854887559