Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017-
04-24] 2,027 sequences; 27,920,864 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1032 165 1e-34
seq681 131 2e-24
seq721 104 3e-16
seq1704 87.8 2e-11
seq675 86.0 8e-11
>seq1032
Length=45607
Score = 165 bits (182), Expect = 1e-34
Identities = 229/319 (72%), Gaps = 9/319 (3%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAG---TTGGTCTTGCCCTCGAGCGAG 868747
||||| ||| || || |||||| |||||| ||| ||||||||||| | ||||||
Sbjct 28500 GCCTTTTGGTAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCACCCAGCGAG 28559
Query 868748 ATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGAC 868807
|| |||||| | ||||||||||| | |||||| ||| | | ||||||| |
Sbjct 28560 ATATTCTCCATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTTGCCGAGCGCC 28619
Query 868808 GCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCG 868867
|||||| |||||||| ||||| || ||||||||||||||||| ||||||||||||
Sbjct 28620 AGGAGCAGACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGTTCATGCCG 28679
Query 868868 ATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG 868927
| ||| || || || | || ||| ||||| | ||||||| | ||||||||||||
Sbjct 28680 AGGAGTGCGCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGATCGCAACGGCCTCGACG 28739
Query 868928 ATGATCTGCCTGGGCACGTCGGCC---GAGGGCTTGTTGACGAGCATCGTGTAGAGCAGG 868984
||||| || | ||| | ||| ||||||||||| || | | | ||||||
Sbjct 28740 ATGAT---GCTCTGTACGACAGCCTTTGAGGGCTTGTTCTTCAGGTGAGAGAACAGCAGG 28796
Query 868985 CAGGCAAAGTCGCAGTGCA 869003
|| || |||||| |||||
Sbjct 28797 CACGCGAAGTCGGTGTGCA 28815
Score = 95.1 bits (104), Expect = 1e-13
Identities = 198/288 (69%), Gaps = 9/288 (3%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
||||||||||| ||| | |||||| || | ||| || |||||||| || ||||||
Sbjct 28818 CCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACCAGGCATGAGACCACGCTTC 28877
Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|| ||||| ||||||| ||| || || ||||| ||||| || || || || || ||
Sbjct 28878 TTCAGCCAGAAGATGGATGCA-AAGGATCCGGAGAAGAAGATACCTTCAACTGCAGCGAA 28936
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| | || || ||| ||| ||| ||||| || || | | ||||||| | |||||
Sbjct 28937 GGCAATCAGTCGCATGGCGAAG--GTCGA-GCTCTTGTCGCTGATCCATCGGAGTGCCCA 28993
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG--TGGTCCTTT 869416
||| |||||| | | | | || | ||||||||||| || ||| || || ||
Sbjct 28994 GTCCGCCTTTCTGCGGATGCAAGGGATATTGTCGATGGCGTTGAACAGGTATGTTCGTTG 29053
Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464
| | || || | | || |||||||| ||||| || || ||||||
Sbjct 29054 TTTG--GGCTCGCTAATGTATGTGTCGATGAGGAGGGAGTATGTCTCC 29099
>seq681
Length=141706
Score = 131 bits (144), Expect = 2e-24
Identities = 104/125 (83%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
||||| ||| | ||||| |||||||||||| | ||||||||| | || || || | ||
Sbjct 48962 CTCTTCGAGATCATCCTTGCCGCCAACTACATGGACATCAAGGCCCTTCTTGACGTGGGC 48903
Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287
|||||| |||| || ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 48902 TGCAAGACTGTTGCGAACATGATCAAGGGCAAGTCGCCGGAAGAGATCCGCAAGACATTC 48843
Query 1592288 AACAT 1592292
|||||
Sbjct 48842 AACAT 48838
>seq721
Length=104476
Score = 104 bits (114), Expect = 3e-16
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|| ||||| || || || |||| ||| |||| || |||||||| | |||||||||||
Sbjct 60131 TGATCGACATAACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGAT 60072
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
|||||| ||||| || | ||||| |||| ||| || | ||||| | | |||
Sbjct 60071 GTGCCGTTCGTGCCAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCG 60012
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || || || ||| ||||| | ||||| ||| || || ||||| || |||||
Sbjct 60011 ATACCACCAGCATTCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCA 59952
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280
|| |||| | |||||||| | ||| ||||| ||
Sbjct 59951 ATGCTGTCGTCTTTCATGTCGATGAGGAAGCAAGA 59917
>seq1704
Length=66733
Score = 87.8 bits (96), Expect = 2e-11
Identities = 139/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| || ||||| ||| |||||| ||||| | || ||||| ||||||| ||
Sbjct 56871 GCTTGGCAAGCTCGCCAGGCAGGATCAGTCGCACAGATGTTTGGATTTCGCGCGATGAGA 56930
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGC-GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461
|||| |||||| | ||| || || | ||||| || ||| ||| ||||
Sbjct 56931 TCGTAGACTTCTTGTTGTA-TGCAGCGAGCTTGGATGCCTCTGTTGCGACGCGCTCGAAG 56989
Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521
|||||||| || || ||||| | || |||||| | ||||||||| || ||| |||
Sbjct 56990 ATGTCGTTCACGAAAGAGTTGAGGATCGACATGGCGCGGTTGGAGATACCAGTGTCTGGG 57049
Query 1254522 TGCACCTGCTTGAGCAC 1254538
|| ||||||||||| ||
Sbjct 57050 TGGACCTGCTTGAGGAC 57066
>seq675
Length=45818
Score = 86.0 bits (94), Expect = 8e-11
Identities = 183/264 (69%), Gaps = 11/264 (4%)
Strand=Plus/Minus
Query 733054 TCAAGATCGTGACGCGCGCCATGCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCC 733113
|||| ||| |||||| | ||| | || || | |||||||| | ||||||||||
Sbjct 13578 TCAAAATCCAAACGCGCCAAACGCGGCGTCCAGAAATCGGCGACAAGTTTTCGTCGCGCC 13519
Query 733114 ACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCGAG--GACATGCCCTGGTCGCC 733171
|||||||||| || ||| || | | ||| | | | || |||||||||| |||
Sbjct 13518 ACGGCCAAAAAGGTGTCGTAGGTCTCCT-CGC-CGAACAAGCAGACATGCCCTTTTCGGA 13461
Query 733172 GCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGAC 733231
| |||| || | |||||||| | || ||||| |||| |||| || ||||||||
Sbjct 13460 CCAAGGCGTCGTC---CCCGACATTATCATGAACCCACACGGTTTCCCCTCCCGCATGAC 13404
Query 733232 CATGGGCAAGATGCTCGAGGCCCTC-CTGGGCAAGGTGGCCTGC-CGCGAGGGCTACATC 733289
| ||||| ||||||||| | || |||| ||| ||| ||| |||| || |||
Sbjct 13403 GGTCGGCAAAATGCTCGAGCTCGTCTCTGGAAAAGCAGGCGTGCTCGCG-GGCAGACA-A 13346
Query 733290 GGCGACGGCACGCCCTTTGGCGGC 733313
| |||| || ||||||||||||
Sbjct 13345 GAATACGGAACCCCCTTTGGCGGC 13322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106972854887559
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |