Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq721 150 2e-31 seq1917 113 4e-20 >seq721 Length=104476 Score = 150 bits (166), Expect = 2e-31 Identities = 608/943 (64%), Gaps = 55/943 (6%) Strand=Plus/Minus Query 139093 TTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTA 139152 ||||| || || ||||| || || | |||| |||| || || | ||||| || Sbjct 60602 TTGCATACGGCGACTTCATCAGGTGCAGTGTACTCGATGATCTCTGTGCACAAGTTGGAG 60543 Query 139153 CACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGC 139212 | ||||||||| || | ||| | || ||||| || ||||| |||||| ||||| || Sbjct 60542 CTCTTGATCGTTCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGG 60483 Query 139213 ATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCT 139272 || | ||| |||||| ||| || | || | |||| | || || | || Sbjct 60482 ATGAAAGGTCCGCCAGTCTCCGTCTGGGCTTCCAGAATGGCAT---ACCAG-----ATCT 60431 Query 139273 TGTATTTGACGCACGTAAAGTT---CGTCGCGCTCGTACTTT-TCGTAG---------AG 139319 | | || ||||| | ||| |||| | | | |||| |||||| || Sbjct 60430 TCT----GA-GCACGCACAGTCTCGCGTCCCCGACCTTCTTTCTCGTAGCGAGTGTAAAG 60376 Query 139320 TTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAG 139379 || |||||| |||||||| | |||| |||| || |||||| || || ||||| || Sbjct 60375 CTCCTCGAATTCGTCACCGTACACATCAGCAAGACCGGGACACTCGTTGGGGCACATCAG 60316 Query 139380 CGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAA 139439 | |||| || ||||| | || ||| ||||||||||||| || ||||||| ||||| Sbjct 60315 GGTCCATTCGGCGTTCTGTTCCACACGCTTCATGAACAGATCGGGGATCCACAGGGCGAA 60256 Query 139440 CAGCAAATCGCGCGC-----CTTCTTATCTTCCGAACCCATGTTACGT---TTCATGTTA 139491 | || ||||| || |||||| ||||| | || ||| | |||| | Sbjct 60255 GAACAGGTCGCGAGCGCGAACTTCTTCCTTTCCGTGGT--TCTTGCGTAGATCCATG--A 60200 Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 | ||||| | | || ||||||||||| || ||||| ||||| | ||||| || Sbjct 60199 AAGAAATGACA----TCGGCGTGCCATGGCTCGAGATAAATGGCAAAAGCGCCAGGACGC 60144 Query 139552 TTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 ||| |||||||||||||| | || | | || ||| | || || | ||| || | Sbjct 60143 TTGTTGCCACCTTGATCGACATAACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATC 60084 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTGCGAGCTCGGACGTCA 139665 || ||| | | ||| ||||| |||| | ||| ||| | | || || || | | Sbjct 60083 AGGCCGTTGGATGTGCCGTTCGTGCCAGCAATGTAGGATCCGGTG---GCACGAATTTTG 60027 Query 139666 TGTACA-TTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGT 139724 || ||| |||| ||||| || || || || || || | | ||||| | ||| Sbjct 60026 TG-ACAGTTGAGACCGATACCACCAGCATTCTTTGAGATCATAGCGCAAATTTTCAGTGT 59968 Query 139725 CTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG-AAAGTT 139783 ||||| || || ||||||||||| | ||| || || ||||| || | || | Sbjct 59967 ATCGTAAATTCCCTCAATGCTGTCGTCTTTCATGTCGATGAGGAAGCAAGAAGCCAACTG 59908 Query 139784 GCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCG 139843 || || ||| || || ||||| || || ||||| ||||| | |||| Sbjct 59907 GCCGT-TCGGCGTACCAGCGCTGAACAGTGTTGGTGATGCGTGTGTGAAGTACTTATTCG 59849 Query 139844 ACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGA 139903 |||| | | ||| || ||||||||| | | ||||| |||||| || ||||| | | Sbjct 59848 ACATGTAGTTGTATGTCTCGATGGCGGCCTCGATATCGTCTCCGTGAATTCCGACTGCTA 59789 Query 139904 CTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAAC 139963 | ||||| | ||| || || | ||||| ||| ||| ||||| ||| || Sbjct 59788 CACGCATGATCATGTGCTGCGGTCTCTCGGCGACCTTGCCATCGATCCGGAGCAGGTATG 59729 Query 139964 CGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | |||||| || ||| |||||||||| ||||||||||| Sbjct 59728 AGCGCTCTAGCGTTTTGAAGCCAAAGTATTGGTAGTTGAAATC 59686 >seq1917 Length=9250 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || |||||||| ||||| ||| || | ||||| | || | Sbjct 9159 AAGACACTCACAGGAAAGACGATTACGCTAGAAGTGGAATCCTCAGACACGATCGACAAT 9100 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||| |||||||| || ||||| || || || || || ||| |||| || Sbjct 9099 GTGAAGAGCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAGCGTCTGATTTTC 9040 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||| |||| ||| | | ||||||| || |||||||| ||||| Sbjct 9039 GCAGGCAAGCAGTTGGAAGATGGTCGTACTTTGTCAGACTACAACATTCAGAAGGAGAGC 8980 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||||||||| ||||| || || Sbjct 8979 ACTCTGCACTTGGTGTTGCGTTTGCGTGGTGG 8948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886200719560