Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1032 149 1e-29 seq1704 141 1e-27 seq681 134 2e-25 seq721 109 9e-18 seq1459 87.8 3e-11 >seq1032 Length=45607 Score = 149 bits (164), Expect = 1e-29 Identities = 185/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAG---TTGGTCTTGCCCT 793947 |||| || ||||| || || || |||||| |||||| ||| ||||||||||| Sbjct 28492 TGACACCGGCCTTTTGGTAGTCTCCAACGCGCTTCTCGAAGAAGAAGTTGGTCTTGCCAC 28551 Query 793948 CGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACC 794007 | |||||||| |||||| | ||||||||||| | |||| ||||| | | Sbjct 28552 CCAGCGAGATATTCTCCATGAAGTCGAACGGGTTGGTGGCGTTGTAGAACTTCTGGTTGC 28611 Query 794008 CGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGT 794067 |||||| | ||||| |||||||| || ||||||||||||||||||||||| |||| Sbjct 28612 CGAGCGCCAGGAGCAGACGGTCGGCCACAAATTCAATGTACTGGCACATGAGCTTAGCGT 28671 Query 794068 TCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 ||||||||| ||| || ||| || | || | | ||||| | ||||||| | |||| Sbjct 28672 TCATGCCGAGGAGTGCGCAGGGGAGGGCGTCTGTCAGGAACTCCTGCTCGATCGCAACGG 28731 Query 794128 CCTCGATGATGAT 794140 |||||| |||||| Sbjct 28732 CCTCGACGATGAT 28744 Score = 118 bits (130), Expect = 2e-20 Identities = 227/331 (69%), Gaps = 13/331 (4%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| ||| | |||||| || ||| || |||||||| || |||||| Sbjct 28818 CCTTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGACCAGGCATGAGACCACGCTTC 28877 Query 794401 TTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 || ||||| ||||||| || || | | | ||||| ||||| || || || || || Sbjct 28878 TTCAGCCAGAAGATGGATGCAAAGGATCCG---GAGAAGAAGATACCTTCAACTGCAGCG 28934 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | | || ||| ||| || || | || || | | ||||||| | ||| Sbjct 28935 AAGGCAATCAGTCGCATGGCGAAGGT---CGAGCTCTTGTCGCTGATCCATCGGAGTGCC 28991 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT--GGTCCT 794575 || || |||||| | | | | || | ||||||||||| || |||| | || | Sbjct 28992 CAGTCCGCCTTTCTGCGGATGCAAGGGATATTGTCGATGGCGTTGAACAGGTATGTTCGT 29051 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 | | || || | | ||| |||||||||||||| ||||| ||||| |||||||||| Sbjct 29052 TGTTTG--GGCTCGCTAATGTATGTGTCGATGAGGAGGGAGTATGTCTCCGAGTGGATGT 29109 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || ||||||||| ||||| ||||| Sbjct 29110 TCTCCATCATGATCTGGAATCCATAGAAGCA 29140 >seq1704 Length=66733 Score = 141 bits (156), Expect = 1e-27 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || ||||||||| |||| || ||||| ||| Sbjct 56833 GTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCAAGCTCGCCAGGCAG 56892 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||||| ||||| | || ||||| ||||| | |||||| |||||| || | Sbjct 56893 GATCAGTCGCACAGATGTTTGGATTTCGCGCGATGAGATCGTAGACTTCTTGTT-GTATG 56951 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | ||||| || ||| ||| |||| |||||||| || || ||||| | Sbjct 56952 CAGCGAGCTTGGATGCCTCTGTTGCGACGCGCTCGAAGATGTCGTTCACGAAAGAGTTGA 57011 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| | ||||||||| || ||| ||||| ||||||||||| || Sbjct 57012 GGATCGACATGGCGCGGTTGGAGATACCAGTGTCTGGGTGGACCTGCTTGAGGAC 57066 >seq681 Length=141706 Score = 134 bits (148), Expect = 2e-25 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 ||||||||||| | ||||| ||| | ||||| |||||||||||| | ||||||||| Sbjct 48979 AGGTCGACCAAGAGATGCTCTTCGAGATCATCCTTGCCGCCAACTACATGGACATCAAGG 48920 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 |||| || || |||| |||||||| || || ||| | ||||||||||||||||| || | Sbjct 48919 CCCTTCTTGACGTGGGCTGCAAGACTGTTGCGAACATGATCAAGGGCAAGTCGCCGGAAG 48860 Query 2035732 ACATCCGCAAGACCTTTAACAT 2035753 | ||||||||||| || ||||| Sbjct 48859 AGATCCGCAAGACATTCAACAT 48838 >seq721 Length=104476 Score = 109 bits (120), Expect = 9e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || |||||||| || || |||| ||| |||| || |||||||| | ||||||||||| Sbjct 60131 TGATCGACATAACGAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGAT 60072 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||| ||||| || | ||||| || | ||| || | ||||| | | ||| Sbjct 60071 GTGCCGTTCGTGCCAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCG 60012 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || || ||| ||||| | ||||| ||||||| || ||||| || ||||| Sbjct 60011 ATACCACCAGCATTCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCA 59952 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755 || |||| | |||||||| | || ||||| || Sbjct 59951 ATGCTGTCGTCTTTCATGTCGATGAGGAAGCAAGA 59917 >seq1459 Length=19671 Score = 87.8 bits (96), Expect = 3e-11 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 2411809 CGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCA 2411868 ||| || |||| ||||| |||| ||| |||||||||| | |||| || || || Sbjct 13310 CGGAGCACGACAAGGTCGATGGGCGCTTTGAGATTGTCGAGGAAGCCGTGAACATCTGCC 13369 Query 2411869 AAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACA 2411928 || || | | ||||| ||| || || || || ||||| | ||| | ||||||||| Sbjct 13370 AACAGCACCTTCACCTCACAGCCCGCAGCCAGGAACTCGGCAATTTTGAGCATGGGCACA 13429 Query 2411929 AAGTAGCCCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGC 2411988 ||||| || ||| ||||| || |||| || || ||||| || |||| ||| || ||| Sbjct 13430 AAGTATCCGCAATGAGGCTTTCCAGTCGTTGCAGTCCCCCAGTAGATGCTGAGTGGTCGC 13489 Query 2411989 T 2411989 | Sbjct 13490 T 13490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916030778764853