Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq721 165 8e-36 seq1032 104 2e-17 >seq721 Length=104476 Score = 165 bits (182), Expect = 8e-36 Identities = 964/1531 (63%), Gaps = 31/1531 (2%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || || ||||| || |||||||||| ||| | |||||| ||| | || Sbjct 61184 TTGACTACCTGGAATTCGCCAGCAAGCACACGTCGCGAATAGATATTGCTGGTGTACGGT 61125 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| |||| || ||| | || || | |||| |||||||||||| || || Sbjct 61124 TCAAAGCACTCGTTGAAGCCCATGATCTGTGAAGTGGATGCGGTAGGCATAGGAGCAACG 61065 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || ||||||| ||| | | || || ||| ||||||| | | ||| ||||| Sbjct 61064 AGCAAAGAGTTTCGCACACCATGCTCAGCAATCTTGGCCTTCAATGAGTCCCAATCCCAA 61005 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC--TCGACTGGCGGGAC 147130 | || || || ||| |||||| |||||||| ||| | || | || | | ||| Sbjct 61004 AGATCTGACGGGGTAACGCCCCACATATCGTACTGAAGCTCGCCCTTTGA--GACTGGAG 60947 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCG 147190 || | | || ||| || || |||| ||||| || || | Sbjct 60946 AACCTTCATAGGTCTCGTAAGGACCAAGCTTCTTGGCCAGATCACAAGAGGCGGTAAGAG 60887 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | ||| ||| ||||| ||| ||| || |||| || | || || |||| Sbjct 60886 CAGCATGGTAGATGGTCTCGAAGATCTGGATGTTCAGCTCACGAGCCTCGGGCGACTCGA 60827 Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310 | |||||||| ||| | |||||||| || | ||| | ||| | ||||| || | Sbjct 60826 ATGGCATACGAAGAGCAAGGAAGGCATCAGCAAGACCGCTAACACCAAGACCGATGGGCC 60767 Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATC 147369 || |||||| ||| || ||| | | |||||||||||| || || ||| Sbjct 60766 TGTGGCGCATGTTGCTCTTCTTGGC-CTCTGGCACTGGATAGTGGTTGACCTCGATGATC 60708 Query 147370 TTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTC 147429 ||||| || || || || | | | | || |||| ||| ||| | || Sbjct 60707 TTGTTCAGATTCTTGGTGACCACCTGAACAACCTCATGCAGCTTCTGGAAGTCAAACTTC 60648 Query 147430 CCGTCTTCGACACGTACGCATTGGTT--CACGGCGATAGACGCCAGATTGCAGACGGCCG 147487 ||| ||| | || ||| |||| || || | ||| || |||||||| ||||| Sbjct 60647 TCGTTCTCG--AGGTCGACATAGGTTGGCAGAGCAAGAGATGCAAGATTGCATACGGCGA 60590 Query 147488 TCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTC 147547 || || | | |||||| | ||| || | ||||| |||| || || || || Sbjct 60589 CTTCATCAGGTGCAGTGTACTCGATGATCTCTGTGCACAAGTTGGAGCTCTTGATCGTTC 60530 Query 147548 CCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 147607 | | ||| | ||| ||||| || || ||| || || ||| |||| ||| | ||||||| Sbjct 60529 CGAGATTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAAGGTCCGC 60470 Query 147608 CGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTC--CTGCGCTCGCACCCGCTG 147665 | ||||| || | ||| | || | || ||| || ||| || ||||| || Sbjct 60469 CAGTCTCCGTCTGGGCTTCCA-GAATGGCATA-CCAGATCTTCTGAGCACGCACAGTCTC 60412 Query 147666 CCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCA 147725 || || || || || ||||| || ||| | | ||| || ||||| ||||| Sbjct 60411 GCGTCCCCGACCTTCTTTCTCGTAGCGAGTGTAAAGCTCCTCGAATTCGTCACCGTACAC 60352 Query 147726 ATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAAC 147785 ||| ||||| |||||||||| | || |||||||| | ||| | ||| | | || Sbjct 60351 ATCAGCAAGACCGGGACACTCGTTGGGGCACATCAGGGTCCATTCGGCGTTCTGTTCCAC 60292 Query 147786 GCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAA-- 147843 || ||| |||||||| || | |||||| ||| | | || ||||| || || | Sbjct 60291 ACGCTTCATGAACAGATCGGGGATCCACAGGGCGAAGAACAGGTCGCGAGC---GCGAAC 60235 Query 147844 ----TCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCC 147898 |||| || | |||||| | || | | | | || || |||||||||| Sbjct 60234 TTCTTCCTTTCCGTGGTTCTTGCGT---AGATCCATGAAAGAAAT-GACATCGGCGTGCC 60179 Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGC 147955 | || || | || | ||| | || || |||| || || || || ||||||| | Sbjct 60178 ATGGCTCGAGATAAATGGCAAAAGCGCCAGGACGCTTGTTGCCACCTTGATCGACATAAC 60119 Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015 | | ||||||| | || || | |||||| ||||||| | | |||||||| ||| Sbjct 60118 GAGCTGTGTTGTTGTAGACACGAAGCATGGGAATCAGGCCGTTGGATGTGCCGTTCGTGC 60059 Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGT 148075 | || | | ||| ||| || | || ||| ||| | || || || || | | Sbjct 60058 CAGCAATGTAGGATCCGGTGGCACGAATTTTGTGACAGTTGAGACCGATACCACCAGCAT 59999 Query 148076 ACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTT 148135 |||||| || ||||||| || ||| ||| || || || |||||||||| || Sbjct 59998 TCTTTGAGATCATAGCGCAAATTTTCAGTGTATCGTAAATTCCCTCAATGCTGTCGTCTT 59939 Query 148136 TGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGG 148195 | | | | | | || || ||| || || || |||| || || ||| || | Sbjct 59938 TCATGTCGATGAGGAAGCAAGAAGCCAACTGGCCGTTCGGCGTACCAGCGCTGAACAGTG 59879 Query 148196 TGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTT 148255 | || ||||| || || | || | ||| | || ||||| || ||| | | Sbjct 59878 TTGGTGATGCGTGTGTGAAGTACTTATTCGACATGTAGTTGTATGTCTCGATGGCGGCCT 59819 Query 148256 CGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGG 148315 |||| ||||| |||||||| || | || || ||||||| ||||||||| |||| |||| Sbjct 59818 CGATATCGTCTCCGTGAATTCCGACTGCTACACGCATGATCATGTGCTGCGGTCTCTCGG 59759 Query 148316 CAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACT 148375 | || | | |||| ||| || ||| || || |||||| | |||||||| | Sbjct 59758 CGACCTTGCCATCGATCCGGAGCAGGTATGAGCGCTCTAGCGTTTTGAAGCCAAAGTATT 59699 Query 148376 TGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||| | |||||| ||||| | ||||| Sbjct 59698 GGTAGTTGAAATCTCTGTCGTAGACAATGGC 59668 >seq1032 Length=45607 Score = 104 bits (114), Expect = 2e-17 Identities = 245/364 (67%), Gaps = 16/364 (4%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || || |||||| |||||| | ||||||||||||||||| | ||||| ||| Sbjct 28864 ATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAAGGCATGCACACCGAC 28805 Query 46974 TTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAAA---TTAAACTCGGACACGAT 47029 || ||||| || || || | | | |||| | || | ||| | | | | Sbjct 28804 TTCGCGTGCCTGCTGTTCT----CTCACCTGAAGAACAAGCCCTCAAAGGCTGTCG---T 28752 Query 47030 CCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCC 47089 | |||||| | ||||| || ||||| ||||||| | || | || || || Sbjct 28751 ACAGAGCATCATCGTCGAGGCCGTTGCGATCGAGCAGGAGTTCCTGACAGACGCCCTCCC 28692 Query 47090 CGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 | ||| | || ||||||||||| || |||||| | || ||||| |||||||| || Sbjct 28691 CTGCGCACTCCTCGGCATGAACGCTAAGCTCATGTGCCAGTACATTGAATTTGTGGCCGA 28632 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACC-GAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 |||||| | || |||||| ||||| ||| | | || || || ||||| || | Sbjct 28631 CCGTCTGCTCCTGGCGCTCGG-CAACCAGAAGTTCTACAACGCCACCAACCCGTTCGACT 28573 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAA---TTTTTTCGAGAAACGAGTCGGAG 47265 | ||| | || || ||||| | ||||| ||||| || |||||||| || || |||| Sbjct 28572 TCATGGAGAATATCTCGCTGGGTGGCAAGACCAACTTCTTCTTCGAGAAGCGCGTTGGAG 28513 Query 47266 AGTA 47269 | || Sbjct 28512 ACTA 28509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599123863720