Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycosphaerella_20sp._20Ston1_20[genbank_20GCA_5F000504405.2_202017- 04-24] 2,027 sequences; 27,920,864 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1032 158 2e-32 seq1704 98.7 1e-14 seq472 98.7 1e-14 seq721 86.0 9e-11 >seq1032 Length=45607 Score = 158 bits (174), Expect = 2e-32 Identities = 192/256 (75%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||||||||||||| | ||||||| | ||||| | | || | || || || Sbjct 28744 ATCATCGTCGAGGCCGTTGCGATCGAGCAGGAGTTCCTGACAGACGCCCTCCCCTGCGCA 28685 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| ||||||||||||| | |||||||||||||||||||||| ||||| |||||||| | Sbjct 28684 CTCCTCGGCATGAACGCTA-AGCTCATGTGCCAGTACATTGAA-TTTGTGGCCGACCGTC 28627 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 ||||| |||||||||| | ||||| |||| | ||||||||||| | ||| Sbjct 28626 TGCTCCTGGCGCTCGGCAAC-CAGAAGTTCTACAACGCCACCAACCCGTTCGACTTCATG 28568 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAA---CTTTTTCGAGCGCCGCG-TGGCGAGTAC 1456758 ||| |||||||| | ||||||||||| ||| |||||| |||| ||| || ||| Sbjct 28567 GAGAATATCTCGCTGGGTGGCAAGACCAACTTCTTCTTCGAGAAGCGCGTTGGAGACTAC 28508 Query 1456759 GCCAAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 28507 CAAAAGGCCGGTGTCA 28492 Score = 147 bits (162), Expect = 3e-29 Identities = 367/544 (67%), Gaps = 15/544 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || |||||||| || || || ||||| ||||||||| | || | Sbjct 29354 GATATGGAACATGTAC-AAGAAGGCCGAAGCATCATTCTGGACTGCCGAGGAGATTGATC 29296 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 | || | ||||| || | | |||||||||||| |||||| Sbjct 29295 TATCAAAGGATCTGCATGACTGGAACAAGCGCCTCACCGACGACGAGCGTTTCTTCATCT 29236 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || || || || || || |||||| ||||||||||| ||||||||||| | Sbjct 29235 CACATGTTCTTGCATTCTT-CGCCGCATCAGATGGCATCGTCAACGAGAACCTGGTGGAA 29177 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | || || | | || || ||||| | || || || ||||||||| Sbjct 29176 CGCTTCAGCGCCGAAGTGACAGTACCCGAAGCACGATGCTTCTATGGATTCCAGATCATG 29117 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || || ||||| ||||| |||||||| ||| | | || || Sbjct 29116 ATGGAGAACATCCACTCGGAGACATACTCCCTCCTCATCGACACATACATTAGCGAGCC- 29058 Query 1456072 GTCGAGAAGGACC--ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | || || | |||| || ||||||||||| | || | | | | ||||| Sbjct 29057 -CAAACAACGAACATACCTGTTCAACGCCATCGACAATATCCCTTGCATCCGCAGAAAGG 28999 Query 1456130 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 | |||||||| | ||||||| | | || | |||||| ||| ||| ||| || | Sbjct 28998 CGGACTGGGCACTCCGATGGATCAGCGACAAGAG-CTCGAC-CTTCGCCATGCGACTGAT 28941 Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGC 1456247 | ||| || || || || || ||||| ||||| || | | ||| ||||||| |||| Sbjct 28940 TGCCTTCGCTGCAGTTGAAGGTATCTTCTTCTCCGG-ATCCTTTGCATCCATCTTCTGGC 28882 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGAC 1456307 | |||||||| || |||||||| |||| || || |||||| | ||| |||||| Sbjct 28881 TGAAGAAGCGTGGTCTCATGCCTGGTC-TCACGTTCTCCAACGAGCTCATCTCGCGCGAC 28823 Query 1456308 GAAG 1456311 |||| Sbjct 28822 GAAG 28819 >seq1704 Length=66733 Score = 98.7 bits (108), Expect = 1e-14 Identities = 159/227 (70%), Gaps = 14/227 (6%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 || ||||||||||| ||||| || | | ||| |||||| ||||||||||| Sbjct 57066 GTCCTCAAGCAGGTCCACCCAGACACTGGT-----ATC-TCCAACCGCGCCATGTCGATC 57013 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 | ||||| || || |||||||| |||| ||| ||| || ||||| || || Sbjct 57012 CTCAACTCTTTCGTGAACGACATCTTCGAGCGCGTCGCAACAGAGGC----ATCCAAGCT 56957 Query 725040 CGC----TCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 ||| | ||||||| |||||| ||||||| ||||| || | ||||| || Sbjct 56956 CGCTGCATACAACAAGAAGTCTACGATCTCATCGCGCGAAATCCAAACATCTGTGCGACT 56897 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||| ||||| || |||| ||||||||| || |||||||||| Sbjct 56896 GATCCTGCCTGGCGAGCTTGCCAAGCACGCCGTGTCTGAGGGCACCA 56850 >seq472 Length=56405 Score = 98.7 bits (108), Expect = 1e-14 Identities = 226/338 (67%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 333011 TCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAG 333070 || |||||||| ||||||| || || || | ||| |||| || || | ||| Sbjct 41262 TCCGCCTCGTCCAGGATGACAATTTTCTGCCTCCCTGGCGGAAGCGTGACTTTCTTCTGA 41203 Query 333071 GCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGT 333130 ||| ||||| | || | ||||||||| | ||| |||||||| || ||||||||| Sbjct 41202 GCGAACCCCTTGATCCTGTTCCTCACGACGTCGATGCCACGCTCGTCAGAGGCGTTGAGT 41143 Query 333131 TCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTC 333190 ||||||||||| || | ||| |||| | ||| |||||| || || || | Sbjct 41142 TCGAGCACGGCTTCTTTATAGGCTTCACCGAGGAGCTGGCGCGCGAGACAGAGGACGGAG 41083 Query 333191 GTGGTCTTGCCCGTGCCGGGCGGACCCGC-CAGCAAGAGGTTGGGCATGTTGCCGTCGGC 333249 ||||| ||||| | |||||| ||||| | | || | |||||||||||| || Sbjct 41082 GTGGTTTTGCCAATCCCGGGC-ATCCCGCTGATGATGACATGGGGCATGTTGCCATCTTT 41024 Query 333250 GGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCAT 333309 || | ||||||| | | || | ||||||||||||||||||||| | | Sbjct 41023 TGCAATGATCTTGAGGCGTTCGATGGTTTCGGTGTTGCCGACAATGTCGTCGAGGAAGAC 40964 Query 333310 TGGGCGGTACTTTTCGATCCATGGGAGGCCAAAGTCGG 333347 || || || || || | |||||| || || ||| || Sbjct 40963 GGGACGATATTTCTCCACCCATGGAAGTTCATAGTTGG 40926 >seq721 Length=104476 Score = 86.0 bits (94), Expect = 9e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 259967 TCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAG 260026 || ||||| || | |||||||| | ||| || ||||| || || || || || || Sbjct 59917 TCTTGCTTCCTCATCGACATGAAAGACGACAGCATTGAGGGAATTTACGATACACTGAAA 59976 Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086 ||||| | ||||| ||| || || || |||||| | | ||||| | || Sbjct 59977 ATTTGCGCTATGATCTCAAAGAATGCTGGTGGTATCGGTCTCAACTGTCACAAAATTCGT 60036 Query 260087 GCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTT 260146 ||| | || ||||| | || ||||| |||||| ||||||||||| | ||||||||| Sbjct 60037 GCCACCGGATCCTACATTGCTGGCACGAACGGCACATCCAACGGCCTGATTCCCATGCTT 60096 Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || || | ||| |||| || || || ||||| || Sbjct 60097 CGTGTCTACAACAACACAGCTCGTTATGTCGATCA 60131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177615692124374